Literature DB >> 26593030

Structure and Dynamics of Liquid Water from ab Initio Molecular Dynamics-Comparison of BLYP, PBE, and revPBE Density Functionals with and without van der Waals Corrections.

I-Chun Lin1, Ari P Seitsonen2, Ivano Tavernelli3, Ursula Rothlisberger3.   

Abstract

We investigate the accuracy provided by different treatments of the exchange and correlation effects, in particular the London dispersion forces, on the properties of liquid water using ab initio molecular dynamics simulations with density functional theory. The lack of London dispersion forces in generalized gradient approximations (GGAs) is remedied by means of dispersion-corrected atom-centered potentials (DCACPs) or damped atom-pairwise dispersion corrections of the C6R(-6) form. We compare results from simulations using GGA density functionals (BLYP, PBE, and revPBE) with data from their van der Waals (vdW) corrected counterparts. As pointed out previously, all vdW-corrected BLYP simulations give rise to highly mobile water whose softened structure is closer to experimental data than the one predicted by the bare BLYP functional. Including vdW interactions in the PBE functional, on the other hand, has little influence on both structural and dynamical properties of water. Augmenting the revPBE functional with either damped atom-pairwise dispersion corrections or DCACP evokes opposite behaviors. The former further softens the already under-structured revPBE water, whereas the latter makes it more glassy. These results demonstrate the delicacy needed in describing weak interactions in molecular liquids.

Entities:  

Year:  2012        PMID: 26593030     DOI: 10.1021/ct3001848

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  14 in total

1.  Reaction Mechanism for Direct Proton Transfer from Carbonic Acid to a Strong Base in Aqueous Solution I: Acid and Base Coordinate and Charge Dynamics.

Authors:  Snehasis Daschakraborty; Philip M Kiefer; Yifat Miller; Yair Motro; Dina Pines; Ehud Pines; James T Hynes
Journal:  J Phys Chem B       Date:  2016-03-02       Impact factor: 2.991

2.  Hydration and vibrational dynamics of betaine (N,N,N-trimethylglycine).

Authors:  Tanping Li; Yaowen Cui; John Mathaga; Revati Kumar; Daniel G Kuroda
Journal:  J Chem Phys       Date:  2015-06-07       Impact factor: 3.488

3.  Water adsorption on bimetallic PtRu/Pt(111) surface alloys.

Authors:  Julia M Fischer; David Mahlberg; Tanglaw Roman; Axel Groß
Journal:  Proc Math Phys Eng Sci       Date:  2016-10       Impact factor: 2.704

4.  Structure and dynamics of solvated hydrogenoxalate and oxalate anions: a theoretical study.

Authors:  Ondřej Kroutil; Babak Minofar; Martin Kabeláč
Journal:  J Mol Model       Date:  2016-08-18       Impact factor: 1.810

5.  Ab initio molecular dynamics simulations of liquid water using high quality meta-GGA functionals.

Authors:  Luis Ruiz Pestana; Narbe Mardirossian; Martin Head-Gordon; Teresa Head-Gordon
Journal:  Chem Sci       Date:  2017-02-27       Impact factor: 9.825

6.  Structure and Dynamics of Water at the Water-Air Interface Using First-Principles Molecular Dynamics Simulations. II. NonLocal vs Empirical van der Waals Corrections.

Authors:  Mayank Dodia; Tatsuhiko Ohto; Sho Imoto; Yuki Nagata
Journal:  J Chem Theory Comput       Date:  2019-05-30       Impact factor: 6.006

7.  OH- and H3O+ Diffusion in Model AEMs and PEMs at Low Hydration: Insights from Ab Initio Molecular Dynamics.

Authors:  Tamar Zelovich; Mark E Tuckerman
Journal:  Membranes (Basel)       Date:  2021-05-12

8.  Water dynamics: relation between hydrogen bond bifurcations, molecular jumps, local density & hydrophobicity.

Authors:  John Tatini Titantah; Mikko Karttunen
Journal:  Sci Rep       Date:  2013-10-21       Impact factor: 4.379

9.  First-principles study of the structure of water layers on flat and stepped Pb electrodes.

Authors:  Xiaohang Lin; Ferdinand Evers; Axel Groß
Journal:  Beilstein J Nanotechnol       Date:  2016-04-11       Impact factor: 3.649

10.  A Comparison of QM/MM Simulations with and without the Drude Oscillator Model Based on Hydration Free Energies of Simple Solutes.

Authors:  Gerhard König; Frank C Pickard; Jing Huang; Walter Thiel; Alexander D MacKerell; Bernard R Brooks; Darrin M York
Journal:  Molecules       Date:  2018-10-19       Impact factor: 4.411

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