Literature DB >> 27538930

Structure and dynamics of solvated hydrogenoxalate and oxalate anions: a theoretical study.

Ondřej Kroutil1,2, Babak Minofar1,3, Martin Kabeláč4.   

Abstract

Hydrogenoxalate (charge -1) and oxalate (charge -2) anions and their solvated forms were studied by various computational techniques. Ab initio quantum chemical calculations in gas phase, in implicit solvent and microsolvated (up to 32 water molecules) environment were performed in order to explore a potential energy surface of both anions. The solvation envelope of water molecules around them and the role of water on the conformation of the anions was revealed by means of Born-Oppenheimer molecular dynamics simulations and optimization procedures. The structure of the anions was found to be dependent on the number of water molecules in the solvation shell. A subtle interplay between intramolecular and intermolecular hydrogen bonding dictates the final conformation and thus an explicit solvent model is necessary for a proper description of this phenomena. Graphical Abstract Solvated hydrogenoxalate and oxalate anions.

Entities:  

Keywords:  Ab initio molecular dynamics; Oxalic acid anions; Potential energy surface; Solvation

Year:  2016        PMID: 27538930     DOI: 10.1007/s00894-016-3075-0

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  29 in total

1.  Dielectric relaxation and solvation dynamics of water in complex chemical and biological systems.

Authors:  N Nandi; K Bhattacharyya; B Bagchi
Journal:  Chem Rev       Date:  2000-06-14       Impact factor: 60.622

2.  Development and testing of a general amber force field.

Authors:  Junmei Wang; Romain M Wolf; James W Caldwell; Peter A Kollman; David A Case
Journal:  J Comput Chem       Date:  2004-07-15       Impact factor: 3.376

3.  Van der Waals effects in ab initio water at ambient and supercritical conditions.

Authors:  Romain Jonchiere; Ari P Seitsonen; Guillaume Ferlat; A Marco Saitta; Rodolphe Vuilleumier
Journal:  J Chem Phys       Date:  2011-10-21       Impact factor: 3.488

4.  Solvation and ion-pairing properties of the aqueous sulfate anion: explicit versus effective electronic polarization.

Authors:  Luís Pegado; Ondrej Marsalek; Pavel Jungwirth; Erik Wernersson
Journal:  Phys Chem Chem Phys       Date:  2012-06-25       Impact factor: 3.676

5.  Gaussian basis sets for accurate calculations on molecular systems in gas and condensed phases.

Authors:  Joost VandeVondele; Jürg Hutter
Journal:  J Chem Phys       Date:  2007-09-21       Impact factor: 3.488

6.  Water adsorption around oxalic acid aggregates: a molecular dynamics simulation of water nucleation on organic aerosols.

Authors:  Maria Darvas; Sylvain Picaud; Pál Jedlovszky
Journal:  Phys Chem Chem Phys       Date:  2011-08-12       Impact factor: 3.676

7.  Oxalic acid and diacylglycerol 36:3 are cross-species markers of sleep debt.

Authors:  Aalim M Weljie; Peter Meerlo; Namni Goel; Arjun Sengupta; Matthew S Kayser; Ted Abel; Morris J Birnbaum; David F Dinges; Amita Sehgal
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-09       Impact factor: 11.205

8.  Bulk versus interfacial aqueous solvation of dicarboxylate dianions.

Authors:  Babak Minofar; Martin Mucha; Pavel Jungwirth; Xin Yang; You-Jun Fu; Xue-Bin Wang; Lai-Sheng Wang
Journal:  J Am Chem Soc       Date:  2004-09-22       Impact factor: 15.419

9.  Adipic and malonic acid aqueous solutions: surface tensions and saturation vapor pressures.

Authors:  Ilona Riipinen; Ismo K Koponen; Göran P Frank; Antti-Pekka Hyvärinen; Joonas Vanhanen; Heikki Lihavainen; Kari E J Lehtinen; Merete Bilde; Markku Kulmala
Journal:  J Phys Chem A       Date:  2007-11-29       Impact factor: 2.781

10.  Surface residence and uptake of methyl chloride and methyl alcohol at the air/water interface studied by vibrational sum frequency spectroscopy and molecular dynamics.

Authors:  Kandice Harper; Babak Minofar; M Roxana Sierra-Hernandez; Nadia N Casillas-Ituarte; Martina Roeselova; Heather C Allen
Journal:  J Phys Chem A       Date:  2009-03-12       Impact factor: 2.781

View more
  2 in total

1.  Force field parametrization of hydrogenoxalate and oxalate anions with scaled charges.

Authors:  Ondřej Kroutil; Milan Předota; Martin Kabeláč
Journal:  J Mol Model       Date:  2017-10-28       Impact factor: 1.810

2.  On-the-Fly Ring-Polymer Molecular Dynamics Calculations of the Dissociative Photodetachment Process of the Oxalate Anion.

Authors:  Yukinobu Takahashi; Yu Hashimoto; Kohei Saito; Toshiyuki Takayanagi
Journal:  Molecules       Date:  2021-11-29       Impact factor: 4.411

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.