Literature DB >> 26879554

Reaction Mechanism for Direct Proton Transfer from Carbonic Acid to a Strong Base in Aqueous Solution I: Acid and Base Coordinate and Charge Dynamics.

Snehasis Daschakraborty1, Philip M Kiefer1, Yifat Miller2, Yair Motro2, Dina Pines2, Ehud Pines2, James T Hynes1,3.   

Abstract

Protonation by carbonic acid H2CO3 of the strong base methylamine CH3NH2 in a neutral contact pair in aqueous solution is followed via Car-Parrinello molecular dynamics simulations. Proton transfer (PT) occurs to form an aqueous solvent-stabilized contact ion pair within 100 fs, a fast time scale associated with the compression of the acid-base hydrogen-bond (H-bond), a key reaction coordinate. This rapid barrierless PT is consistent with the carbonic acid-protonated base pKa difference that considerably favors the PT, and supports the view of intact carbonic acid as potentially important proton donor in assorted biological and environmental contexts. The charge redistribution within the H-bonded complex during PT supports a Mulliken picture of charge transfer from the nitrogen base to carbonic acid without altering the transferring hydrogen's charge from approximately midway between that of a hydrogen atom and that of a proton.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 26879554      PMCID: PMC5763008          DOI: 10.1021/acs.jpcb.5b12742

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  37 in total

1.  Towards an assessment of the accuracy of density functional theory for first principles simulations of water.

Authors:  Jeffrey C Grossman; Eric Schwegler; Erik W Draeger; François Gygi; Giulia Galli
Journal:  J Chem Phys       Date:  2004-01-01       Impact factor: 3.488

2.  Dispersion corrections to density functionals for water aromatic interactions.

Authors:  Urs Zimmerli; Michele Parrinello; Petros Koumoutsakos
Journal:  J Chem Phys       Date:  2004-02-08       Impact factor: 3.488

Review 3.  Spatial aspects of intracellular pH regulation in heart muscle.

Authors:  Richard D Vaughan-Jones; Kenneth W Spitzer; Pawel Swietach
Journal:  Prog Biophys Mol Biol       Date:  2005-07-07       Impact factor: 3.667

4.  The role of hydrogen bonding in the decomposition of H₂CO₃ in water: mechanistic insights from ab initio metadynamics studies of aqueous clusters.

Authors:  Mirza Galib; Gabriel Hanna
Journal:  J Phys Chem B       Date:  2014-05-21       Impact factor: 2.991

5.  Mechanistic insights into the dissociation and decomposition of carbonic acid in water via the hydroxide route: an ab initio metadynamics study.

Authors:  Mirza Galib; Gabriel Hanna
Journal:  J Phys Chem B       Date:  2011-11-22       Impact factor: 2.991

6.  Aqueous carbonic acid (H2CO3).

Authors:  Thomas Loerting; Juergen Bernard
Journal:  Chemphyschem       Date:  2010-08-02       Impact factor: 3.102

7.  Depth-dependent dissociation of nitric acid at an aqueous surface: Car-Parrinello molecular dynamics.

Authors:  Shuzhi Wang; Roberto Bianco; James T Hynes
Journal:  J Phys Chem A       Date:  2009-02-19       Impact factor: 2.781

8.  Mechanism of the hydration of carbon dioxide: direct participation of H2O versus microsolvation.

Authors:  Minh Tho Nguyen; Myrna H Matus; Virgil E Jackson; Thi Ngan Vu; James R Rustad; David A Dixon
Journal:  J Phys Chem A       Date:  2008-09-25       Impact factor: 2.781

9.  Hydrogen-bonding structure and dynamics of aqueous carbonate species from car-parrinello molecular dynamics simulations.

Authors:  P Padma Kumar; Andrey G Kalinichev; R James Kirkpatrick
Journal:  J Phys Chem B       Date:  2009-01-22       Impact factor: 2.991

10.  Ultrafast librational relaxation of H2O in liquid water.

Authors:  Jakob Petersen; Klaus B Møller; Rossend Rey; James T Hynes
Journal:  J Phys Chem B       Date:  2012-11-26       Impact factor: 2.991

View more
  6 in total

1.  Intact carbonic acid is a viable protonating agent for biological bases.

Authors:  Daniel Aminov; Dina Pines; Philip M Kiefer; Snehasis Daschakraborty; James T Hynes; Ehud Pines
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-30       Impact factor: 11.205

2.  Reaction Mechanism for Direct Proton Transfer from Carbonic Acid to a Strong Base in Aqueous Solution II: Solvent Coordinate-Dependent Reaction Path.

Authors:  Snehasis Daschakraborty; Philip M Kiefer; Yifat Miller; Yair Motro; Dina Pines; Ehud Pines; James T Hynes
Journal:  J Phys Chem B       Date:  2016-03-02       Impact factor: 2.991

3.  C70 Fullerene Cage as a Novel Catalyst for Efficient Proton Transfer Reactions between Small Molecules: A Theoretical study.

Authors:  Pradeep R Varadwaj; Arpita Varadwaj; Helder M Marques
Journal:  Sci Rep       Date:  2019-07-23       Impact factor: 4.379

4.  Characterization of a trans-trans Carbonic Acid-Fluoride Complex by Infrared Action Spectroscopy in Helium Nanodroplets.

Authors:  Daniel A Thomas; Eike Mucha; Maike Lettow; Gerard Meijer; Mariana Rossi; Gert von Helden
Journal:  J Am Chem Soc       Date:  2019-03-27       Impact factor: 15.419

5.  Broadband fluorescence reveals mechanistic differences in excited-state proton transfer to protic and aprotic solvents.

Authors:  Pragya Verma; Arnulf Rosspeintner; Bogdan Dereka; Eric Vauthey; Tatu Kumpulainen
Journal:  Chem Sci       Date:  2020-07-08       Impact factor: 9.825

6.  The Role of Carbonate in Catalytic Oxidations.

Authors:  Shanti Gopal Patra; Amir Mizrahi; Dan Meyerstein
Journal:  Acc Chem Res       Date:  2020-09-25       Impact factor: 22.384

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.