Literature DB >> 26590521

Nonadiabatic rate constants for proton transfer and proton-coupled electron transfer reactions in solution: Effects of quadratic term in the vibronic coupling expansion.

Alexander V Soudackov1, Sharon Hammes-Schiffer1.   

Abstract

Rate constant expressions for vibronically nonadiabatic proton transfer and proton-coupled electron transfer reactions are presented and analyzed. The regimes covered include electronically adiabatic and nonadiabatic reactions, as well as high-frequency and low-frequency proton donor-acceptor vibrational modes. These rate constants differ from previous rate constants derived with the cumulant expansion approach in that the logarithmic expansion of the vibronic coupling in terms of the proton donor-acceptor distance includes a quadratic as well as a linear term. The analysis illustrates that inclusion of this quadratic term in the framework of the cumulant expansion framework may significantly impact the rate constants at high temperatures for proton transfer interfaces with soft proton donor-acceptor modes that are associated with small force constants and weak hydrogen bonds. The effects of the quadratic term may also become significant in these regimes when using the vibronic coupling expansion in conjunction with a thermal averaging procedure for calculating the rate constant. In this case, however, the expansion of the coupling can be avoided entirely by calculating the couplings explicitly for the range of proton donor-acceptor distances sampled. The effects of the quadratic term for weak hydrogen-bonding systems are less significant for more physically realistic models that prevent the sampling of unphysical short proton donor-acceptor distances. Additionally, the rigorous relation between the cumulant expansion and thermal averaging approaches is clarified. In particular, the cumulant expansion rate constant includes effects from dynamical interference between the proton donor-acceptor and solvent motions and becomes equivalent to the thermally averaged rate constant when these dynamical effects are neglected. This analysis identifies the regimes in which each rate constant expression is valid and thus will be important for future applications to proton transfer and proton-coupled electron transfer in chemical and biological processes.

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Year:  2015        PMID: 26590521      PMCID: PMC4654738          DOI: 10.1063/1.4935045

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  9 in total

1.  Quantum and dynamical effects of proton donor-acceptor vibrational motion in nonadiabatic proton-coupled electron transfer reactions.

Authors:  Alexander Soudackov; Elizabeth Hatcher; Sharon Hammes-Schiffer
Journal:  J Chem Phys       Date:  2005-01-01       Impact factor: 3.488

2.  Proton-coupled electron transfer in soybean lipoxygenase: dynamical behavior and temperature dependence of kinetic isotope effects.

Authors:  Elizabeth Hatcher; Alexander V Soudackov; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2007-01-10       Impact factor: 15.419

3.  Theoretical analysis of proton relays in electrochemical proton-coupled electron transfer.

Authors:  Benjamin Auer; Laura E Fernandez; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2011-05-11       Impact factor: 15.419

4.  Deep proton tunneling in the electronically adiabatic and non-adiabatic limits: comparison of the quantum and classical treatment of donor-acceptor motion in a protein environment.

Authors:  Abdelkrim Benabbas; Bridget Salna; J Timothy Sage; Paul M Champion
Journal:  J Chem Phys       Date:  2015-03-21       Impact factor: 3.488

5.  Theoretical Studies of Proton-Coupled Electron Transfer: Models and Concepts Relevant to Bioenergetics.

Authors:  Sharon Hammes-Schiffer; Elizabeth Hatcher; Hiroshi Ishikita; Jonathan H Skone; Alexander V Soudackov
Journal:  Coord Chem Rev       Date:  2008-02-01       Impact factor: 22.315

Review 6.  Hydrogen tunneling in enzymes and biomimetic models.

Authors:  Joshua P Layfield; Sharon Hammes-Schiffer
Journal:  Chem Rev       Date:  2013-12-20       Impact factor: 60.622

7.  Modeling temperature dependent kinetic isotope effects for hydrogen transfer in a series of soybean lipoxygenase mutants: The effect of anharmonicity upon transfer distance.

Authors:  Matthew P Meyer; Judith P Klinman
Journal:  Chem Phys       Date:  2005-12-07       Impact factor: 2.348

8.  Analysis of kinetic isotope effects for proton-coupled electron transfer reactions.

Authors:  Sarah J Edwards; Alexander V Soudackov; Sharon Hammes-Schiffer
Journal:  J Phys Chem A       Date:  2009-03-12       Impact factor: 2.781

9.  Hydrogen donor-acceptor fluctuations from kinetic isotope effects: a phenomenological model.

Authors:  Daniel Roston; Christopher M Cheatum; Amnon Kohen
Journal:  Biochemistry       Date:  2012-08-15       Impact factor: 3.162

  9 in total
  5 in total

1.  Theoretical Study of Shallow Distance Dependence of Proton-Coupled Electron Transfer in Oligoproline Peptides.

Authors:  Pengfei Li; Alexander V Soudackov; Brian Koronkiewicz; James M Mayer; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2020-08-03       Impact factor: 15.419

2.  Proton-coupled electron transfer reactions: analytical rate constants and case study of kinetic isotope effects in lipoxygenase.

Authors:  Alexander V Soudackov; Sharon Hammes-Schiffer
Journal:  Faraday Discuss       Date:  2016-12-22       Impact factor: 4.008

3.  The Soybean Lipoxygenase-Substrate Complex: Correlation between the Properties of Tunneling-Ready States and ENDOR-Detected Structures of Ground States.

Authors:  Adam R Offenbacher; Ajay Sharma; Peter E Doan; Judith P Klinman; Brian M Hoffman
Journal:  Biochemistry       Date:  2020-02-05       Impact factor: 3.162

4.  Hydrostatic Pressure Studies Distinguish Global from Local Protein Motions in C-H Activation by Soybean Lipoxygenase-1.

Authors:  Shenshen Hu; Jérôme Cattin-Ortolá; Jeffrey W Munos; Judith P Klinman
Journal:  Angew Chem Int Ed Engl       Date:  2016-06-27       Impact factor: 15.336

5.  Enhanced Rigidification within a Double Mutant of Soybean Lipoxygenase Provides Experimental Support for Vibronically Nonadiabatic Proton-Coupled Electron Transfer Models.

Authors:  Shenshen Hu; Alexander V Soudackov; Sharon Hammes-Schiffer; Judith P Klinman
Journal:  ACS Catal       Date:  2017-04-20       Impact factor: 13.084

  5 in total

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