Literature DB >> 27735009

Proton-coupled electron transfer reactions: analytical rate constants and case study of kinetic isotope effects in lipoxygenase.

Alexander V Soudackov1, Sharon Hammes-Schiffer1.   

Abstract

A general theory has been developed for proton-coupled electron transfer (PCET), which is vital to a wide range of chemical and biological processes. This theory describes PCET reactions in terms of nonadiabatic transitions between reactant and product electron-proton vibronic states and includes the effects of thermal fluctuations of the solvent or protein environment, as well as the proton donor-acceptor motion. Within the framework of this general PCET theory, a series of analytical rate constant expressions has been derived for PCET reactions in well-defined regimes. Herein, the application of this theory to PCET in the enzyme soybean lipoxygenase illustrates the regimes of validity for the various rate constant expressions and elucidates the fundamental physical principles dictating PCET reactions. Such theoretical studies provide significant physical insights that guide the interpretation of experimental data and lead to experimentally testable predictions. A combination of theoretical treatments with atomic-level simulations is essential to understanding PCET.

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Year:  2016        PMID: 27735009      PMCID: PMC5217758          DOI: 10.1039/c6fd00122j

Source DB:  PubMed          Journal:  Faraday Discuss        ISSN: 1359-6640            Impact factor:   4.008


  35 in total

1.  Temperature-dependent isotope effects in soybean lipoxygenase-1: correlating hydrogen tunneling with protein dynamics.

Authors:  Michael J Knapp; Keith Rickert; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2002-04-17       Impact factor: 15.419

2.  Taking Ockham's razor to enzyme dynamics and catalysis.

Authors:  David R Glowacki; Jeremy N Harvey; Adrian J Mulholland
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

Review 3.  Thermochemistry of proton-coupled electron transfer reagents and its implications.

Authors:  Jeffrey J Warren; Tristan A Tronic; James M Mayer
Journal:  Chem Rev       Date:  2010-10-06       Impact factor: 60.622

4.  Role of Solvent Dynamics in Photoinduced Proton-Coupled Electron Transfer in a Phenol-Amine Complex in Solution.

Authors:  Puja Goyal; Sharon Hammes-Schiffer
Journal:  J Phys Chem Lett       Date:  2015-08-26       Impact factor: 6.475

5.  Enzyme dynamics and tunneling enhanced by compression in the hydrogen abstraction catalyzed by soybean lipoxygenase-1.

Authors:  Ismael Tejero; Mireia Garcia-Viloca; Angels Gonzalez-Lafont; José M Lluch; Darrin M York
Journal:  J Phys Chem B       Date:  2006-12-07       Impact factor: 2.991

6.  Theoretical analysis of proton relays in electrochemical proton-coupled electron transfer.

Authors:  Benjamin Auer; Laura E Fernandez; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2011-05-11       Impact factor: 15.419

7.  Theoretical Studies of Proton-Coupled Electron Transfer: Models and Concepts Relevant to Bioenergetics.

Authors:  Sharon Hammes-Schiffer; Elizabeth Hatcher; Hiroshi Ishikita; Jonathan H Skone; Alexander V Soudackov
Journal:  Coord Chem Rev       Date:  2008-02-01       Impact factor: 22.315

8.  Impact of distal mutation on hydrogen transfer interface and substrate conformation in soybean lipoxygenase.

Authors:  Sarah J Edwards; Alexander V Soudackov; Sharon Hammes-Schiffer
Journal:  J Phys Chem B       Date:  2010-05-20       Impact factor: 2.991

9.  Proton-coupled electron transfer versus hydrogen atom transfer: generation of charge-localized diabatic states.

Authors:  Andrew Sirjoosingh; Sharon Hammes-Schiffer
Journal:  J Phys Chem A       Date:  2011-02-25       Impact factor: 2.781

10.  Density-functional investigation on the mechanism of H-atom abstraction by lipoxygenase.

Authors:  Nicolai Lehnert; Edward I Solomon
Journal:  J Biol Inorg Chem       Date:  2002-11-14       Impact factor: 3.358

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  15 in total

1.  Theoretical Study of Shallow Distance Dependence of Proton-Coupled Electron Transfer in Oligoproline Peptides.

Authors:  Pengfei Li; Alexander V Soudackov; Brian Koronkiewicz; James M Mayer; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2020-08-03       Impact factor: 15.419

2.  The Soybean Lipoxygenase-Substrate Complex: Correlation between the Properties of Tunneling-Ready States and ENDOR-Detected Structures of Ground States.

Authors:  Adam R Offenbacher; Ajay Sharma; Peter E Doan; Judith P Klinman; Brian M Hoffman
Journal:  Biochemistry       Date:  2020-02-05       Impact factor: 3.162

3.  Catalysts by Design: The Power of Theory.

Authors:  Sharon Hammes-Schiffer
Journal:  Acc Chem Res       Date:  2017-03-21       Impact factor: 22.384

4.  Activity-Related Microsecond Dynamics Revealed by Temperature-Jump Förster Resonance Energy Transfer Measurements on Thermophilic Alcohol Dehydrogenase.

Authors:  Morgan B Vaughn; Jianyu Zhang; Thomas G Spiro; R Brian Dyer; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2018-01-11       Impact factor: 15.419

Review 5.  Understanding Biological Hydrogen Transfer Through the Lens of Temperature Dependent Kinetic Isotope Effects.

Authors:  Judith P Klinman; Adam R Offenbacher
Journal:  Acc Chem Res       Date:  2018-08-28       Impact factor: 22.384

6.  Fundamental Insights into Proton-Coupled Electron Transfer in Soybean Lipoxygenase from Quantum Mechanical/Molecular Mechanical Free Energy Simulations.

Authors:  Pengfei Li; Alexander V Soudackov; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2018-02-19       Impact factor: 15.419

7.  Biophysical Characterization of a Disabled Double Mutant of Soybean Lipoxygenase: The "Undoing" of Precise Substrate Positioning Relative to Metal Cofactor and an Identified Dynamical Network.

Authors:  Shenshen Hu; Adam R Offenbacher; Erin M Thompson; Christine L Gee; Jarett Wilcoxen; Cody A M Carr; Daniil M Prigozhin; Vanessa Yang; Tom Alber; R David Britt; James S Fraser; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2019-01-15       Impact factor: 15.419

8.  Origins of Enzyme Catalysis: Experimental Findings for C-H Activation, New Models, and Their Relevance to Prevailing Theoretical Constructs.

Authors:  Judith P Klinman; Adam R Offenbacher; Shenshen Hu
Journal:  J Am Chem Soc       Date:  2017-12-15       Impact factor: 15.419

9.  Enhanced Rigidification within a Double Mutant of Soybean Lipoxygenase Provides Experimental Support for Vibronically Nonadiabatic Proton-Coupled Electron Transfer Models.

Authors:  Shenshen Hu; Alexander V Soudackov; Sharon Hammes-Schiffer; Judith P Klinman
Journal:  ACS Catal       Date:  2017-04-20       Impact factor: 13.084

10.  Characterization of the Fleeting Hydroxoiron(III) Complex of the Pentadentate TMC-py Ligand.

Authors:  Wei-Min Ching; Ang Zhou; Johannes E M N Klein; Ruixi Fan; Gerald Knizia; Christopher J Cramer; Yisong Guo; Lawrence Que
Journal:  Inorg Chem       Date:  2017-08-31       Impact factor: 5.165

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