Literature DB >> 25796225

Deep proton tunneling in the electronically adiabatic and non-adiabatic limits: comparison of the quantum and classical treatment of donor-acceptor motion in a protein environment.

Abdelkrim Benabbas1, Bridget Salna1, J Timothy Sage1, Paul M Champion1.   

Abstract

Analytical models describing the temperature dependence of the deep tunneling rate, useful for proton, hydrogen, or hydride transfer in proteins, are developed and compared. Electronically adiabatic and non-adiabatic expressions are presented where the donor-acceptor (D-A) motion is treated either as a quantized vibration or as a classical "gating" distribution. We stress the importance of fitting experimental data on an absolute scale in the electronically adiabatic limit, which normally applies to these reactions, and find that vibrationally enhanced deep tunneling takes place on sub-ns timescales at room temperature for typical H-bonding distances. As noted previously, a small room temperature kinetic isotope effect (KIE) does not eliminate deep tunneling as a major transport channel. The quantum approach focuses on the vibrational sub-space composed of the D-A and hydrogen atom motions, where hydrogen bonding and protein restoring forces quantize the D-A vibration. A Duschinsky rotation is mandated between the normal modes of the reactant and product states and the rotation angle depends on the tunneling particle mass. This tunnel-mass dependent rotation contributes substantially to the KIE and its temperature dependence. The effect of the Duschinsky rotation is solved exactly to find the rate in the electronically non-adiabatic limit and compared to the Born-Oppenheimer (B-O) approximation approach. The B-O approximation is employed to find the rate in the electronically adiabatic limit, where we explore both harmonic and quartic double-well potentials for the hydrogen atom bound states. Both the electronically adiabatic and non-adiabatic rates are found to diverge at high temperature unless the proton coupling includes the often neglected quadratic term in the D-A displacement from equilibrium. A new expression is presented for the electronically adiabatic tunnel rate in the classical limit for D-A motion that should be useful to experimentalists working near room temperature. This expression also holds when a broad protein conformational distribution of D-A equilibrium distances dominates the spread of the D-A vibrational wavefunction.

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Year:  2015        PMID: 25796225     DOI: 10.1063/1.4913591

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Nonadiabatic rate constants for proton transfer and proton-coupled electron transfer reactions in solution: Effects of quadratic term in the vibronic coupling expansion.

Authors:  Alexander V Soudackov; Sharon Hammes-Schiffer
Journal:  J Chem Phys       Date:  2015-11-21       Impact factor: 3.488

2.  Proton-coupled electron transfer reactions: analytical rate constants and case study of kinetic isotope effects in lipoxygenase.

Authors:  Alexander V Soudackov; Sharon Hammes-Schiffer
Journal:  Faraday Discuss       Date:  2016-12-22       Impact factor: 4.008

3.  The Soybean Lipoxygenase-Substrate Complex: Correlation between the Properties of Tunneling-Ready States and ENDOR-Detected Structures of Ground States.

Authors:  Adam R Offenbacher; Ajay Sharma; Peter E Doan; Judith P Klinman; Brian M Hoffman
Journal:  Biochemistry       Date:  2020-02-05       Impact factor: 3.162

4.  Wide-dynamic-range kinetic investigations of deep proton tunnelling in proteins.

Authors:  Bridget Salna; Abdelkrim Benabbas; J Timothy Sage; Jasper van Thor; Paul M Champion
Journal:  Nat Chem       Date:  2016-05-30       Impact factor: 24.427

  4 in total

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