Literature DB >> 26590340

Neurodata Without Borders: Creating a Common Data Format for Neurophysiology.

Jeffery L Teeters1, Keith Godfrey2, Rob Young2, Chinh Dang2, Claudia Friedsam3, Barry Wark3, Hiroki Asari4, Simon Peron5, Nuo Li5, Adrien Peyrache6, Gennady Denisov5, Joshua H Siegle2, Shawn R Olsen2, Christopher Martin7, Miyoung Chun7, Shreejoy Tripathy8, Timothy J Blanche1, Kenneth Harris9, György Buzsáki6, Christof Koch2, Markus Meister4, Karel Svoboda5, Friedrich T Sommer10.   

Abstract

The Neurodata Without Borders (NWB) initiative promotes data standardization in neuroscience to increase research reproducibility and opportunities. In the first NWB pilot project, neurophysiologists and software developers produced a common data format for recordings and metadata of cellular electrophysiology and optical imaging experiments. The format specification, application programming interfaces, and sample datasets have been released.
Copyright © 2015 Elsevier Inc. All rights reserved.

Mesh：

Year:  2015        PMID： 26590340     DOI： 10.1016/j.neuron.2015.10.025

Source DB:  PubMed          Journal:  Neuron        ISSN： 0896-6273            Impact factor:   17.173


  60 in total

1.  MEAnalyzer - a Spike Train Analysis Tool for Multi Electrode Arrays.

Authors:  Raha M Dastgheyb; Seung-Wan Yoo; Norman J Haughey
Journal:  Neuroinformatics       Date:  2020-01

2.  Recommendations for the Design and Analysis of In Vivo Electrophysiology Studies.

Authors: 
Journal:  J Neurosci       Date:  2018-06-27       Impact factor: 6.167

3.  A NWB-based dataset and processing pipeline of human single-neuron activity during a declarative memory task.

Authors:  N Chandravadia; D Liang; A G P Schjetnan; A Carlson; M Faraut; J M Chung; C M Reed; B Dichter; U Maoz; S K Kalia; T A Valiante; A N Mamelak; U Rutishauser
Journal:  Sci Data       Date:  2020-03-04       Impact factor: 6.444

4.  Neurophysiological analytics for all! Free open-source software tools for documenting, analyzing, visualizing, and sharing using electronic notebooks.

Authors:  David M Rosenberg; Charles C Horn
Journal:  J Neurophysiol       Date:  2016-04-20       Impact factor: 2.714

5.  Modeling sources of interlaboratory variability in electrophysiological properties of mammalian neurons.

Authors:  Dmitry Tebaykin; Shreejoy J Tripathy; Nathalie Binnion; Brenna Li; Richard C Gerkin; Paul Pavlidis
Journal:  J Neurophysiol       Date:  2017-12-20       Impact factor: 2.714

Review 6.  Continuing progress of spike sorting in the era of big data.

Authors:  David Carlson; Lawrence Carin
Journal:  Curr Opin Neurobiol       Date:  2019-03-08       Impact factor: 6.627

7.  Science in the cloud (SIC): A use case in MRI connectomics.

Authors:  Gregory Kiar; Krzysztof J Gorgolewski; Dean Kleissas; William Gray Roncal; Brian Litt; Brian Wandell; Russel A Poldrack; Martin Wiener; R Jacob Vogelstein; Randal Burns; Joshua T Vogelstein
Journal:  Gigascience       Date:  2017-05-01       Impact factor: 6.524

8.  NeuroIntegrative Connectivity (NIC) Informatics Tool for Brain Functional Connectivity Network Analysis in Cohort Studies.

Authors:  Satya S Sahoo; Arthur Gershon; Shafiabadi Nassim; Ghosh Kaushik; Tatsuoka Curtis; Samden D Lhatoo; Guadalupe Fernandez-BacaVaca
Journal:  AMIA Annu Symp Proc       Date:  2021-01-25

Review 9.  Standards for data acquisition and software-based analysis of in vivo electroencephalography recordings from animals. A TASK1-WG5 report of the AES/ILAE Translational Task Force of the ILAE.

Authors:  Jason T Moyer; Vadym Gnatkovsky; Tomonori Ono; Jakub Otáhal; Joost Wagenaar; William C Stacey; Jeffrey Noebels; Akio Ikeda; Kevin Staley; Marco de Curtis; Brian Litt; Aristea S Galanopoulou
Journal:  Epilepsia       Date:  2017-11       Impact factor: 5.864

10.  Excitatory and Inhibitory Subnetworks Are Equally Selective during Decision-Making and Emerge Simultaneously during Learning.

Authors:  Farzaneh Najafi; Gamaleldin F Elsayed; Robin Cao; Eftychios Pnevmatikakis; Peter E Latham; John P Cunningham; Anne K Churchland
Journal:  Neuron       Date:  2019-11-18       Impact factor: 17.173
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