Literature DB >> 31273627

MEAnalyzer - a Spike Train Analysis Tool for Multi Electrode Arrays.

Raha M Dastgheyb1, Seung-Wan Yoo2, Norman J Haughey2,3.   

Abstract

Despite a multitude of commercially available multi-electrode array (MEA) systems that are each capable of rapid data acquisition from cultured neurons or slice cultures, there is a general lack of available analysis tools. These analysis gaps restrict the efficient extraction of meaningful physiological features from data sets, and limit interpretation of how experimental manipulations modify neural network activity. Here, we present the development of a user-friendly, publicly-available software called MEAnalyzer. This software contains several spike train analysis methods including relevant statistical calculations, periodicity analysis, functional connectivity analysis, and advanced data visualizations in a user-friendly graphical user interface that requires no coding from the user. Widespread availability of this user friendly and mathematically advanced program will stimulate and enhance the use of MEA technologies.

Keywords:  Burst analysis; Data visualization; Electrophysiology; Functional connectivity; MEA; Multi-electrodel array; Neuron; Spike analysis; Spike trains

Year:  2020        PMID: 31273627     DOI: 10.1007/s12021-019-09431-0

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  45 in total

1.  SpikeNET: an event-driven simulation package for modelling large networks of spiking neurons.

Authors:  Arnaud Delorme; Simon J Thorpe
Journal:  Network       Date:  2003-11       Impact factor: 1.273

2.  An integrative analysis platform for multiple neural spike train data.

Authors:  Yu Huang; Xiangning Li; Yanling Li; Qingwei Xu; Qiang Lu; Qian Liu
Journal:  J Neurosci Methods       Date:  2008-05-03       Impact factor: 2.390

3.  Multisite hippocampal slice recording and stimulation using a 32 element microelectrode array.

Authors:  J L Novak; B C Wheeler
Journal:  J Neurosci Methods       Date:  1988-03       Impact factor: 2.390

4.  A method for assessing significance of peaks in cross-correlation histograms.

Authors:  A W Wiegner; M M Wierzbicka
Journal:  J Neurosci Methods       Date:  1987-12       Impact factor: 2.390

5.  A new approach to neural cell culture for long-term studies.

Authors:  S M Potter; T B DeMarse
Journal:  J Neurosci Methods       Date:  2001-09-30       Impact factor: 2.390

6.  nSTAT: open-source neural spike train analysis toolbox for Matlab.

Authors:  I Cajigas; W Q Malik; E N Brown
Journal:  J Neurosci Methods       Date:  2012-09-05       Impact factor: 2.390

7.  MultiElec: A MATLAB Based Application for MEA Data Analysis.

Authors:  Vassilis Georgiadis; Anastasis Stephanou; Paul A Townsend; Thomas R Jackson
Journal:  PLoS One       Date:  2015-06-15       Impact factor: 3.240

8.  Post-publication sharing of data and tools.

Authors:  Paul N Schofield; Tania Bubela; Thomas Weaver; Lili Portilla; Stephen D Brown; John M Hancock; David Einhorn; Glauco Tocchini-Valentini; Martin Hrabe de Angelis; Nadia Rosenthal
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

9.  ToolConnect: A Functional Connectivity Toolbox for In vitro Networks.

Authors:  Vito Paolo Pastore; Daniele Poli; Aleksandar Godjoski; Sergio Martinoia; Paolo Massobrio
Journal:  Front Neuroinform       Date:  2016-03-30       Impact factor: 4.081

10.  A comparison of computational methods for detecting bursts in neuronal spike trains and their application to human stem cell-derived neuronal networks.

Authors:  Ellese Cotterill; Paul Charlesworth; Christopher W Thomas; Ole Paulsen; Stephen J Eglen
Journal:  J Neurophysiol       Date:  2016-04-20       Impact factor: 2.714

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  2 in total

1.  Early prediction of developing spontaneous activity in cultured neuronal networks.

Authors:  David Cabrera-Garcia; Davide Warm; Pablo de la Fuente; M Teresa Fernández-Sánchez; Antonello Novelli; Joaquín M Villanueva-Balsera
Journal:  Sci Rep       Date:  2021-10-14       Impact factor: 4.379

2.  Neuronal excitatory-to-inhibitory balance is altered in cerebral organoid models of genetic neurological diseases.

Authors:  Simote T Foliaki; Benjamin Schwarz; Bradley R Groveman; Ryan O Walters; Natalia C Ferreira; Christina D Orrù; Anna Smith; Aleksandar Wood; Olivia M Schmit; Phoebe Freitag; Jue Yuan; Wenquan Zou; Catharine M Bosio; James A Carroll; Cathryn L Haigh
Journal:  Mol Brain       Date:  2021-10-11       Impact factor: 4.041

  2 in total

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