Literature DB >> 29105070

Standards for data acquisition and software-based analysis of in vivo electroencephalography recordings from animals. A TASK1-WG5 report of the AES/ILAE Translational Task Force of the ILAE.

Jason T Moyer1, Vadym Gnatkovsky2, Tomonori Ono3, Jakub Otáhal4, Joost Wagenaar1, William C Stacey5, Jeffrey Noebels6, Akio Ikeda7, Kevin Staley8, Marco de Curtis2, Brian Litt9, Aristea S Galanopoulou10.   

Abstract

Electroencephalography (EEG)-the direct recording of the electrical activity of populations of neurons-is a tremendously important tool for diagnosing, treating, and researching epilepsy. Although standard procedures for recording and analyzing human EEG exist and are broadly accepted, there are no such standards for research in animal models of seizures and epilepsy-recording montages, acquisition systems, and processing algorithms may differ substantially among investigators and laboratories. The lack of standard procedures for acquiring and analyzing EEG from animal models of epilepsy hinders the interpretation of experimental results and reduces the ability of the scientific community to efficiently translate new experimental findings into clinical practice. Accordingly, the intention of this report is twofold: (1) to review current techniques for the collection and software-based analysis of neural field recordings in animal models of epilepsy, and (2) to offer pertinent standards and reporting guidelines for this research. Specifically, we review current techniques for signal acquisition, signal conditioning, signal processing, data storage, and data sharing, and include applicable recommendations to standardize collection and reporting. We close with a discussion of challenges and future opportunities, and include a supplemental report of currently available acquisition systems and analysis tools. This work represents a collaboration on behalf of the American Epilepsy Society/International League Against Epilepsy (AES/ILAE) Translational Task Force (TASK1-Workgroup 5), and is part of a larger effort to harmonize video-EEG interpretation and analysis methods across studies using in vivo and in vitro seizure and epilepsy models. Wiley Periodicals, Inc.
© 2017 International League Against Epilepsy.

Entities:  

Keywords:  Data sharing; Data storage; Electrocorticography; Electroencephalography; Signal processing

Mesh:

Year:  2017        PMID: 29105070      PMCID: PMC5683416          DOI: 10.1111/epi.13909

Source DB:  PubMed          Journal:  Epilepsia        ISSN: 0013-9580            Impact factor:   5.864


  34 in total

1.  FASTER: Fully Automated Statistical Thresholding for EEG artifact Rejection.

Authors:  H Nolan; R Whelan; R B Reilly
Journal:  J Neurosci Methods       Date:  2010-07-21       Impact factor: 2.390

2.  Neurodata Without Borders: Creating a Common Data Format for Neurophysiology.

Authors:  Jeffery L Teeters; Keith Godfrey; Rob Young; Chinh Dang; Claudia Friedsam; Barry Wark; Hiroki Asari; Simon Peron; Nuo Li; Adrien Peyrache; Gennady Denisov; Joshua H Siegle; Shawn R Olsen; Christopher Martin; Miyoung Chun; Shreejoy Tripathy; Timothy J Blanche; Kenneth Harris; György Buzsáki; Christof Koch; Markus Meister; Karel Svoboda; Friedrich T Sommer
Journal:  Neuron       Date:  2015-11-18       Impact factor: 17.173

3.  Guideline 6: A proposal for standard montages to be used in clinical EEG.

Authors: 
Journal:  J Clin Neurophysiol       Date:  2006-04       Impact factor: 2.177

4.  Low-cost, high-fidelity, adaptive cancellation of periodic 60 Hz noise.

Authors:  Kyle D Wesson; Robert M Ochshorn; Bruce R Land
Journal:  J Neurosci Methods       Date:  2009-09-16       Impact factor: 2.390

5.  Automated removal of EKG artifact from EEG data using independent component analysis and continuous wavelet transformation.

Authors:  Mehdi Bagheri Hamaneh; Numthip Chitravas; Kitti Kaiboriboon; Samden D Lhatoo; Kenneth A Loparo
Journal:  IEEE Trans Biomed Eng       Date:  2014-06       Impact factor: 4.538

6.  Digital filter design for electrophysiological data--a practical approach.

Authors:  Andreas Widmann; Erich Schröger; Burkhard Maess
Journal:  J Neurosci Methods       Date:  2014-08-13       Impact factor: 2.390

7.  Closed-loop seizure control with very high frequency electrical stimulation at seizure onset in the GAERS model of absence epilepsy.

Authors:  Timothy S Nelson; Courtney L Suhr; Dean R Freestone; Alan Lai; Amy J Halliday; Karen J McLean; Anthony N Burkitt; Mark J Cook
Journal:  Int J Neural Syst       Date:  2011-04       Impact factor: 5.866

8.  Parallel artefact rejection for epileptiform activity detection in routine EEG.

Authors:  D Kelleher; A Temko; S Orregan; D Nash; B McNamara; D Costello; W P Marnane
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2011

9.  Large-scale electrophysiology: acquisition, compression, encryption, and storage of big data.

Authors:  Benjamin H Brinkmann; Mark R Bower; Keith A Stengel; Gregory A Worrell; Matt Stead
Journal:  J Neurosci Methods       Date:  2009-04-01       Impact factor: 2.390

Review 10.  High-frequency oscillations in epileptic brain.

Authors:  Anatol Bragin; Jerome Engel; Richard J Staba
Journal:  Curr Opin Neurol       Date:  2010-04       Impact factor: 5.710

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  9 in total

1.  Adult neurogenesis in the mouse dentate gyrus protects the hippocampus from neuronal injury following severe seizures.

Authors:  Swati Jain; John J LaFrancois; Justin J Botterill; David Alcantara-Gonzalez; Helen E Scharfman
Journal:  Hippocampus       Date:  2019-01-23       Impact factor: 3.899

2.  Harmonization of the pipeline for seizure detection to phenotype post-traumatic epilepsy in a preclinical multicenter study on post-traumatic epileptogenesis.

Authors:  Pablo M Casillas-Espinosa; Pedro Andrade; Cesar Santana-Gomez; Tomi Paananen; Gregory Smith; Idrish Ali; Robert Ciszek; Xavier Ekolle Ndode-Ekane; Rhys D Brady; Jussi Tohka; Matthew R Hudson; Piero Perucca; Emma L Braine; Riikka Immonen; Noora Puhakka; Sandy R Shultz; Nigel C Jones; Richard J Staba; Asla Pitkänen; Terence J O'Brien
Journal:  Epilepsy Res       Date:  2019-04-27       Impact factor: 3.045

3.  Harmonization in preclinical epilepsy research: A joint AES/ILAE translational initiative.

Authors:  Aristea S Galanopoulou; Jacqueline A French; Terence O'Brien; Michele Simonato
Journal:  Epilepsia       Date:  2017-11       Impact factor: 5.864

4.  Methodological standards and interpretation of video-electroencephalography in adult control rodents. A TASK1-WG1 report of the AES/ILAE Translational Task Force of the ILAE.

Authors:  Shilpa D Kadam; Raimondo D'Ambrosio; Venceslas Duveau; Corinne Roucard; Norberto Garcia-Cairasco; Akio Ikeda; Marco de Curtis; Aristea S Galanopoulou; Kevin M Kelly
Journal:  Epilepsia       Date:  2017-11       Impact factor: 5.864

5.  Methodological standards and functional correlates of depth in vivo electrophysiological recordings in control rodents. A TASK1-WG3 report of the AES/ILAE Translational Task Force of the ILAE.

Authors:  Amanda E Hernan; Catherine A Schevon; Gregory A Worrell; Aristea S Galanopoulou; Philippe Kahane; Marco de Curtis; Akio Ikeda; Pascale Quilichini; Adam Williamson; Norberto Garcia-Cairasco; Rod C Scott; Igor Timofeev
Journal:  Epilepsia       Date:  2017-11       Impact factor: 5.864

6.  Modulation of locomotor behaviors by location-specific epileptic spiking and seizures.

Authors:  Joseph R Geraghty; Danielle Senador; Biswajit Maharathi; Mitchell P Butler; Deepshika Sudhakar; Rachael A Smith; Yichao Wu; Jeffrey A Loeb
Journal:  Epilepsy Behav       Date:  2020-12-10       Impact factor: 2.937

7.  Antiepileptogenesis and disease modification: Progress, challenges, and the path forward-Report of the Preclinical Working Group of the 2018 NINDS-sponsored antiepileptogenesis and disease modification workshop.

Authors:  Aristea S Galanopoulou; Wolfgang Löscher; Laura Lubbers; Terence J O'Brien; Kevin Staley; Annamaria Vezzani; Raimondo D'Ambrosio; H Steve White; Harald Sontheimer; John A Wolf; Roy Twyman; Vicky Whittemore; Karen S Wilcox; Brian Klein
Journal:  Epilepsia Open       Date:  2021-05-06

8.  Methodologic recommendations and possible interpretations of video-EEG recordings in immature rodents used as experimental controls: A TASK1-WG2 report of the ILAE/AES Joint Translational Task Force.

Authors:  Ozlem Akman; Yogendra H Raol; Stéphane Auvin; Miguel A Cortez; Hana Kubova; Marco de Curtis; Akio Ikeda; F Edward Dudek; Aristea S Galanopoulou
Journal:  Epilepsia Open       Date:  2018-10-11

9.  A companion to the preclinical common data elements and case report forms for rodent EEG studies. A report of the TASK3 EEG Working Group of the ILAE/AES Joint Translational Task Force.

Authors:  Tomonori Ono; Joost Wagenaar; Filippo S Giorgi; Petr Fabera; Ryosuke Hanaya; John Jefferys; Jason T Moyer; Lauren C Harte-Hargrove; Aristea S Galanopoulou
Journal:  Epilepsia Open       Date:  2018-09-24
  9 in total

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