Literature DB >> 26565028

A Revised Mechanism for Human Cyclooxygenase-2.

Yi Liu1, Justine P Roth2.   

Abstract

The mechanism of ω-6 polyunsaturated fatty acid oxidation by wild-type cyclooxygenase 2 and the Y334F variant, lacking a conserved hydrogen bond to the catalytic tyrosyl radical/tyrosine, was examined for the first time under physiologically relevant conditions. The enzymes show apparent bimolecular rate constants and deuterium kinetic isotope effects that increase in proportion to co-substrate concentrations before converging to limiting values. The trends exclude multiple dioxygenase mechanisms as well as the proposal that initial hydrogen atom abstraction from the fatty acid is the first irreversible step in catalysis. Temperature dependent kinetic studies reinforce the novel finding that hydrogen transfer from the reduced catalytic tyrosine to a terminal peroxyl radical is the first irreversible step that controls regio- and stereospecific product formation.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  dioxygenase; enzyme mechanism; fatty acid; isotope effect; prostaglandin

Mesh:

Substances:

Year:  2015        PMID: 26565028      PMCID: PMC4705412          DOI: 10.1074/jbc.M115.668038

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  35 in total

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Authors:  Carol A Rouzer; Lawrence J Marnett
Journal:  Chem Rev       Date:  2003-06       Impact factor: 60.622

Review 2.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

3.  Viscosity dependence of the kinetics of the diffusion-controlled reaction of carbon monoxide and myoglobin.

Authors:  B B Hasinoff; S B Chishti
Journal:  Biochemistry       Date:  1982-08-31       Impact factor: 3.162

4.  Experimental and computational investigations of oxygen reactivity in a heme and tyrosyl radical-containing fatty acid α-(di)oxygenase.

Authors:  Gregory S Huff; Irina S Doncheva; David W Brinkley; Alfredo M Angeles-Boza; Arnab Mukherjee; Christopher J Cramer; Justine P Roth
Journal:  Biochemistry       Date:  2011-08-08       Impact factor: 3.162

5.  Stereospecificity of hydrogen abstraction in the conversion of arachidonic acid to 15R-HETE by aspirin-treated cyclooxygenase-2. Implications for the alignment of substrate in the active site.

Authors:  C Schneider; A R Brash
Journal:  J Biol Chem       Date:  2000-02-18       Impact factor: 5.157

6.  Investigating substrate promiscuity in cyclooxygenase-2: the role of Arg-120 and residues lining the hydrophobic groove.

Authors:  Alex J Vecchio; Benjamin J Orlando; Ritwik Nandagiri; Michael G Malkowski
Journal:  J Biol Chem       Date:  2012-05-25       Impact factor: 5.157

7.  Molecular oxygen dependent steps in fatty acid oxidation by cyclooxygenase-1.

Authors:  Arnab Mukherjee; David W Brinkley; Keng-Ming Chang; Justine P Roth
Journal:  Biochemistry       Date:  2007-03-14       Impact factor: 3.162

8.  Determination of the structural environment of the tyrosyl radical in prostaglandin H2 synthase-1: a high frequency ENDOR/EPR study.

Authors:  John C Wilson; Gang Wu; Ah-lim Tsai; Gary J Gerfen
Journal:  J Am Chem Soc       Date:  2005-02-16       Impact factor: 15.419

9.  Investigation of diffusion-limited rates of chymotrypsin reactions by viscosity variation.

Authors:  A C Brouwer; J F Kirsch
Journal:  Biochemistry       Date:  1982-03-16       Impact factor: 3.162

Review 10.  Prostaglandin H synthase: resolved and unresolved mechanistic issues.

Authors:  Ah-Lim Tsai; Richard J Kulmacz
Journal:  Arch Biochem Biophys       Date:  2009-09-01       Impact factor: 4.013

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  7 in total

Review 1.  Interactions of fatty acids, nonsteroidal anti-inflammatory drugs, and coxibs with the catalytic and allosteric subunits of cyclooxygenases-1 and -2.

Authors:  William L Smith; Michael G Malkowski
Journal:  J Biol Chem       Date:  2019-02-01       Impact factor: 5.157

2.  Fatty Acid Binding to the Allosteric Subunit of Cyclooxygenase-2 Relieves a Tonic Inhibition of the Catalytic Subunit.

Authors:  Liang Dong; Chong Yuan; Benjamin J Orlando; Michael G Malkowski; William L Smith
Journal:  J Biol Chem       Date:  2016-10-18       Impact factor: 5.157

3.  Lipidomics Reveals Dramatic Physiological Kinetic Isotope Effects during the Enzymatic Oxygenation of Polyunsaturated Fatty Acids Ex Vivo.

Authors:  Aaron R Navratil; Mikhail S Shchepinov; Edward A Dennis
Journal:  J Am Chem Soc       Date:  2017-12-19       Impact factor: 15.419

4.  Role of water in cyclooxygenase catalysis and design of anti-inflammatory agents targeting two sites of the enzyme.

Authors:  Manpreet Kaur; Baljit Kaur; Jagroop Kaur; Anudeep Kaur; Rajbir Bhatti; Palwinder Singh
Journal:  Sci Rep       Date:  2020-07-01       Impact factor: 4.379

Review 5.  Structural basis for endoperoxide-forming oxygenases.

Authors:  Takahiro Mori; Ikuro Abe
Journal:  Beilstein J Org Chem       Date:  2022-06-21       Impact factor: 2.544

Review 6.  The enzymology of the human prostanoid pathway.

Authors:  Roger Gregory Biringer
Journal:  Mol Biol Rep       Date:  2020-05-19       Impact factor: 2.316

Review 7.  How Supraphysiological Oxygen Levels in Standard Cell Culture Affect Oxygen-Consuming Reactions.

Authors:  Jeffrey A Stuart; Joao Fonseca; Fereshteh Moradi; Cassandra Cunningham; Bishoy Seliman; Cydney R Worsfold; Sarah Dolan; John Abando; Lucas A Maddalena
Journal:  Oxid Med Cell Longev       Date:  2018-09-30       Impact factor: 6.543

  7 in total

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