Literature DB >> 26555653

An Efficient Labelling Approach to Harness Backbone and Side-Chain Protons in (1) H-Detected Solid-State NMR Spectroscopy.

Deni Mance1, Tessa Sinnige1,2, Mohammed Kaplan1, Siddarth Narasimhan1, Mark Daniëls1, Klaartje Houben1, Marc Baldus3, Markus Weingarth4.   

Abstract

(1) H-detection can greatly improve spectral sensitivity in biological solid-state NMR (ssNMR), thus allowing the study of larger and more complex proteins. However, the general requirement to perdeuterate proteins critically curtails the potential of (1) H-detection by the loss of aliphatic side-chain protons, which are important probes for protein structure and function. Introduced herein is a labelling scheme for (1) H-detected ssNMR, and it gives high quality spectra for both side-chain and backbone protons, and allows quantitative assignments and aids in probing interresidual contacts. Excellent (1) H resolution in membrane proteins is obtained, the topology and dynamics of an ion channel were studied. This labelling scheme will open new avenues for the study of challenging proteins by ssNMR.
© 2015 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the Creative Commons Attribution Non-Commercial NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.

Entities:  

Keywords:  ion channels; membrane proteins; proton detection; side-chain protons; solid-state NMR spectroscopy

Year:  2015        PMID: 26555653      PMCID: PMC4691318          DOI: 10.1002/anie.201509170

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  18 in total

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Authors:  Y Ishii; R Tycko
Journal:  J Magn Reson       Date:  2000-01       Impact factor: 2.229

2.  High resolution 1H-detected solid-state NMR spectroscopy of protein aliphatic resonances: access to tertiary structure information.

Authors:  Sam Asami; Peter Schmieder; Bernd Reif
Journal:  J Am Chem Soc       Date:  2010-11-03       Impact factor: 15.419

3.  Low-power decoupling at high spinning frequencies in high static fields.

Authors:  Markus Weingarth; Geoffrey Bodenhausen; Piotr Tekely
Journal:  J Magn Reson       Date:  2009-05-03       Impact factor: 2.229

4.  Structure calculation from unambiguous long-range amide and methyl 1H-1H distance restraints for a microcrystalline protein with MAS solid-state NMR spectroscopy.

Authors:  Rasmus Linser; Benjamin Bardiaux; Victoria Higman; Uwe Fink; Bernd Reif
Journal:  J Am Chem Soc       Date:  2011-03-24       Impact factor: 15.419

5.  Proton clouds to measure long-range contacts between nonexchangeable side chain protons in solid-state NMR.

Authors:  Tessa Sinnige; Mark Daniëls; Marc Baldus; Markus Weingarth
Journal:  J Am Chem Soc       Date:  2014-01-31       Impact factor: 15.419

6.  Solid-state NMR spectroscopy of 10% 13C labeled ubiquitin: spectral simplification and stereospecific assignment of isopropyl groups.

Authors:  Mario Schubert; Theofanis Manolikas; Marco Rogowski; Beat H Meier
Journal:  J Biomol NMR       Date:  2006-07       Impact factor: 2.835

7.  Selective methyl group protonation of perdeuterated proteins.

Authors:  M K Rosen; K H Gardner; R C Willis; W E Parris; T Pawson; L E Kay
Journal:  J Mol Biol       Date:  1996-11-15       Impact factor: 5.469

8.  Nano-mole scale side-chain signal assignment by 1H-detected protein solid-state NMR by ultra-fast magic-angle spinning and stereo-array isotope labeling.

Authors:  Songlin Wang; Sudhakar Parthasarathy; Yusuke Nishiyama; Yuki Endo; Takahiro Nemoto; Kazuo Yamauchi; Tetsuo Asakura; Mitsuhiro Takeda; Tsutomu Terauchi; Masatsune Kainosho; Yoshitaka Ishii
Journal:  PLoS One       Date:  2015-04-09       Impact factor: 3.240

9.  Recovery from slow inactivation in K+ channels is controlled by water molecules.

Authors:  Jared Ostmeyer; Sudha Chakrapani; Albert C Pan; Eduardo Perozo; Benoît Roux
Journal:  Nature       Date:  2013-07-28       Impact factor: 49.962

10.  Rapid proton-detected NMR assignment for proteins with fast magic angle spinning.

Authors:  Emeline Barbet-Massin; Andrew J Pell; Joren S Retel; Loren B Andreas; Kristaps Jaudzems; W Trent Franks; Andrew J Nieuwkoop; Matthias Hiller; Victoria Higman; Paul Guerry; Andrea Bertarello; Michael J Knight; Michele Felletti; Tanguy Le Marchand; Svetlana Kotelovica; Inara Akopjana; Kaspars Tars; Monica Stoppini; Vittorio Bellotti; Martino Bolognesi; Stefano Ricagno; James J Chou; Robert G Griffin; Hartmut Oschkinat; Anne Lesage; Lyndon Emsley; Torsten Herrmann; Guido Pintacuda
Journal:  J Am Chem Soc       Date:  2014-08-18       Impact factor: 15.419

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  24 in total

1.  MAS dependent sensitivity of different isotopomers in selectively methyl protonated protein samples in solid state NMR.

Authors:  Kai Xue; Riddhiman Sarkar; Zdenek Tosner; Daniela Lalli; Carina Motz; Benita Koch; Guido Pintacuda; Bernd Reif
Journal:  J Biomol NMR       Date:  2019-09-12       Impact factor: 2.835

Review 2.  High-sensitivity protein solid-state NMR spectroscopy.

Authors:  Venkata S Mandala; Mei Hong
Journal:  Curr Opin Struct Biol       Date:  2019-04-25       Impact factor: 6.809

3.  Interaction of Monomeric Interleukin-8 with CXCR1 Mapped by Proton-Detected Fast MAS Solid-State NMR.

Authors:  Sang Ho Park; Sabrina Berkamp; Jasmina Radoicic; Anna A De Angelis; Stanley J Opella
Journal:  Biophys J       Date:  2017-12-19       Impact factor: 4.033

4.  Conformational Dynamics in the Core of Human Y145Stop Prion Protein Amyloid Probed by Relaxation Dispersion NMR.

Authors:  Matthew D Shannon; Theint Theint; Dwaipayan Mukhopadhyay; Krystyna Surewicz; Witold K Surewicz; Dominique Marion; Paul Schanda; Christopher P Jaroniec
Journal:  Chemphyschem       Date:  2018-11-07       Impact factor: 3.102

5.  Structure of fully protonated proteins by proton-detected magic-angle spinning NMR.

Authors:  Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Daniela Lalli; Andrea Bertarello; Tanguy Le Marchand; Diane Cala-De Paepe; Svetlana Kotelovica; Inara Akopjana; Benno Knott; Sebastian Wegner; Frank Engelke; Anne Lesage; Lyndon Emsley; Kaspars Tars; Torsten Herrmann; Guido Pintacuda
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-03       Impact factor: 11.205

6.  NMR studies of lipid regulation of the K+ channel KcsA.

Authors:  Dongyu Zhang; Gary S Howarth; Lia A Parkin; Ann E McDermott
Journal:  Biochim Biophys Acta Biomembr       Date:  2020-10-13       Impact factor: 4.019

7.  Proton Detected Solid-State NMR of Membrane Proteins at 28 Tesla (1.2 GHz) and 100 kHz Magic-Angle Spinning.

Authors:  Evgeny Nimerovsky; Kumar Tekwani Movellan; Xizhou Cecily Zhang; Marcel C Forster; Eszter Najbauer; Kai Xue; Rıza Dervişoǧlu; Karin Giller; Christian Griesinger; Stefan Becker; Loren B Andreas
Journal:  Biomolecules       Date:  2021-05-18

8.  1 H-Detected Solid-State NMR Studies of Water-Inaccessible Proteins In Vitro and In Situ.

Authors:  João Medeiros-Silva; Deni Mance; Mark Daniëls; Shehrazade Jekhmane; Klaartje Houben; Marc Baldus; Markus Weingarth
Journal:  Angew Chem Int Ed Engl       Date:  2016-09-27       Impact factor: 15.336

9.  Proton-Based Structural Analysis of a Heptahelical Transmembrane Protein in Lipid Bilayers.

Authors:  Daniela Lalli; Matthew N Idso; Loren B Andreas; Sunyia Hussain; Naomi Baxter; Songi Han; Bradley F Chmelka; Guido Pintacuda
Journal:  J Am Chem Soc       Date:  2017-08-11       Impact factor: 15.419

10.  Combined 1H-Detected Solid-State NMR Spectroscopy and Electron Cryotomography to Study Membrane Proteins across Resolutions in Native Environments.

Authors:  Lindsay A Baker; Tessa Sinnige; Pascale Schellenberger; Jeanine de Keyzer; C Alistair Siebert; Arnold J M Driessen; Marc Baldus; Kay Grünewald
Journal:  Structure       Date:  2017-12-14       Impact factor: 5.006

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