Literature DB >> 26527275

Neutron and high-resolution room-temperature X-ray data collection from crystallized lytic polysaccharide monooxygenase.

John Paul Bacik1, Sophanit Mekasha2, Zarah Forsberg2, Andrey Kovalevsky3, Jay C Nix4, Matthew J Cuneo3, Leighton Coates3, Gustav Vaaje-Kolstad2, Julian C H Chen1, Vincent G H Eijsink2, Clifford J Unkefer1.   

Abstract

Bacteria and fungi express lytic polysaccharide monooxgyenase (LPMO) enzymes that act in conjunction with canonical hydrolytic sugar-processing enzymes to rapidly convert polysaccharides such as chitin, cellulose and starch to single monosaccharide products. In order to gain a better understanding of the structure and oxidative mechanism of these enzymes, large crystals (1-3 mm(3)) of a chitin-processing LPMO from the Gram-positive soil bacterium Jonesia denitrificans were grown and screened for their ability to diffract neutrons. In addition to the collection of neutron diffraction data, which were processed to 2.1 Å resolution, a high-resolution room-temperature X-ray diffraction data set was collected and processed to 1.1 Å resolution in space group P212121. To our knowledge, this work marks the first successful neutron crystallographic experiment on an LPMO. Joint X-ray/neutron refinement of the resulting data will reveal new details of the structure and mechanism of this recently discovered class of enzymes.

Entities:  

Keywords:  Jonesia denitrificans; biofuel; chitin; lytic polysaccharide monooxygenase; neutron crystallography

Mesh:

Substances:

Year:  2015        PMID: 26527275      PMCID: PMC4631597          DOI: 10.1107/S2053230X15019743

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  22 in total

1.  Cleavage of cellulose by a CBM33 protein.

Authors:  Zarah Forsberg; Gustav Vaaje-Kolstad; Bjørge Westereng; Anne C Bunæs; Yngve Stenstrøm; Alasdair MacKenzie; Morten Sørlie; Svein J Horn; Vincent G H Eijsink
Journal:  Protein Sci       Date:  2011-08-08       Impact factor: 6.725

2.  Structural and functional characterization of a conserved pair of bacterial cellulose-oxidizing lytic polysaccharide monooxygenases.

Authors:  Zarah Forsberg; Alasdair K Mackenzie; Morten Sørlie; Åsmund K Røhr; Ronny Helland; Andrew S Arvai; Gustav Vaaje-Kolstad; Vincent G H Eijsink
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-27       Impact factor: 11.205

3.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

4.  Integration, scaling, space-group assignment and post-refinement.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

5.  Direct observation of hydrogen atom dynamics and interactions by ultrahigh resolution neutron protein crystallography.

Authors:  Julian C-H Chen; B Leif Hanson; S Zoë Fisher; Paul Langan; Andrey Y Kovalevsky
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

6.  Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components.

Authors:  R Jason Quinlan; Matt D Sweeney; Leila Lo Leggio; Harm Otten; Jens-Christian N Poulsen; Katja Salomon Johansen; Kristian B R M Krogh; Christian Isak Jørgensen; Morten Tovborg; Annika Anthonsen; Theodora Tryfona; Clive P Walter; Paul Dupree; Feng Xu; Gideon J Davies; Paul H Walton
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-29       Impact factor: 11.205

Review 7.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

8.  The copper active site of CBM33 polysaccharide oxygenases.

Authors:  Glyn R Hemsworth; Edward J Taylor; Robbert Q Kim; Rebecca C Gregory; Sally J Lewis; Johan P Turkenburg; Alison Parkin; Gideon J Davies; Paul H Walton
Journal:  J Am Chem Soc       Date:  2013-04-10       Impact factor: 15.419

9.  Structure and boosting activity of a starch-degrading lytic polysaccharide monooxygenase.

Authors:  Leila Lo Leggio; Thomas J Simmons; Jens-Christian N Poulsen; Kristian E H Frandsen; Glyn R Hemsworth; Mary A Stringer; Pernille von Freiesleben; Morten Tovborg; Katja S Johansen; Leonardo De Maria; Paul V Harris; Chee-Leong Soong; Paul Dupree; Theodora Tryfona; Nicolas Lenfant; Bernard Henrissat; Gideon J Davies; Paul H Walton
Journal:  Nat Commun       Date:  2015-01-22       Impact factor: 14.919

10.  A C4-oxidizing lytic polysaccharide monooxygenase cleaving both cellulose and cello-oligosaccharides.

Authors:  Trine Isaksen; Bjørge Westereng; Finn L Aachmann; Jane W Agger; Daniel Kracher; Roman Kittl; Roland Ludwig; Dietmar Haltrich; Vincent G H Eijsink; Svein J Horn
Journal:  J Biol Chem       Date:  2013-12-09       Impact factor: 5.486

View more
  1 in total

Review 1.  Metalloprotein catalysis: structural and mechanistic insights into oxidoreductases from neutron protein crystallography.

Authors:  Gabriela C Schröder; Flora Meilleur
Journal:  Acta Crystallogr D Struct Biol       Date:  2021-09-27       Impact factor: 7.652

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.