Literature DB >> 25502203

Application of in situ diffraction in high-throughput structure determination platforms.

Pierre Aller1, Juan Sanchez-Weatherby, James Foadi, Graeme Winter, Carina M C Lobley, Danny Axford, Alun W Ashton, Domenico Bellini, Jose Brandao-Neto, Simone Culurgioni, Alice Douangamath, Ramona Duman, Gwyndaf Evans, Stuart Fisher, Ralf Flaig, David R Hall, Petra Lukacik, Marco Mazzorana, Katherine E McAuley, Vitaliy Mykhaylyk, Robin L Owen, Neil G Paterson, Pierpaolo Romano, James Sandy, Thomas Sorensen, Frank von Delft, Armin Wagner, Anna Warren, Mark Williams, David I Stuart, Martin A Walsh.   

Abstract

Macromolecular crystallography (MX) is the most powerful technique available to structural biologists to visualize in atomic detail the macromolecular machinery of the cell. Since the emergence of structural genomics initiatives, significant advances have been made in all key steps of the structure determination process. In particular, third-generation synchrotron sources and the application of highly automated approaches to data acquisition and analysis at these facilities have been the major factors in the rate of increase of macromolecular structures determined annually. A plethora of tools are now available to users of synchrotron beamlines to enable rapid and efficient evaluation of samples, collection of the best data, and in favorable cases structure solution in near real time. Here, we provide a short overview of the emerging use of collecting X-ray diffraction data directly from the crystallization experiment. These in situ experiments are now routinely available to users at a number of synchrotron MX beamlines. A practical guide to the use of the method on the MX suite of beamlines at Diamond Light Source is given.

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Year:  2015        PMID: 25502203     DOI: 10.1007/978-1-4939-2230-7_13

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  11 in total

1.  In situ X-ray data collection and structure phasing of protein crystals at Structural Biology Center 19-ID.

Authors:  Karolina Michalska; Kemin Tan; Changsoo Chang; Hui Li; Catherine Hatzos-Skintges; Michael Molitsky; Randy Alkire; Andrzej Joachimiak
Journal:  J Synchrotron Radiat       Date:  2015-10-15       Impact factor: 2.616

2.  Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.

Authors:  Pierre Aller; Allen M Orville
Journal:  Methods Mol Biol       Date:  2021

3.  The use of haptic interfaces and web services in crystallography: an application for a 'screen to beam' interface.

Authors:  Andrew E Bruno; Alexei S Soares; Robin L Owen; Edward H Snell
Journal:  J Appl Crystallogr       Date:  2016-11-11       Impact factor: 3.304

4.  High-throughput in situ X-ray screening of and data collection from protein crystals at room temperature and under cryogenic conditions.

Authors:  Jana Broecker; Takefumi Morizumi; Wei-Lin Ou; Viviane Klingel; Anling Kuo; David J Kissick; Andrii Ishchenko; Ming-Yue Lee; Shenglan Xu; Oleg Makarov; Vadim Cherezov; Craig M Ogata; Oliver P Ernst
Journal:  Nat Protoc       Date:  2018-01-04       Impact factor: 13.491

5.  xia2.multiplex: a multi-crystal data-analysis pipeline.

Authors:  Richard J Gildea; James Beilsten-Edmands; Danny Axford; Sam Horrell; Pierre Aller; James Sandy; Juan Sanchez-Weatherby; C David Owen; Petra Lukacik; Claire Strain-Damerell; Robin L Owen; Martin A Walsh; Graeme Winter
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-05-18       Impact factor: 5.699

6.  A Versatile System for High-Throughput In Situ X-ray Screening and Data Collection of Soluble and Membrane-Protein Crystals.

Authors:  Jana Broecker; Viviane Klingel; Wei-Lin Ou; Aidin R Balo; David J Kissick; Craig M Ogata; Anling Kuo; Oliver P Ernst
Journal:  Cryst Growth Des       Date:  2016-10-03       Impact factor: 4.076

7.  Applications of the BLEND Software to Crystallographic Data from Membrane Proteins.

Authors:  Pierre Aller; Tian Geng; Gwyndaf Evans; James Foadi
Journal:  Adv Exp Med Biol       Date:  2016       Impact factor: 2.622

8.  An introduction to sample preparation and imaging by cryo-electron microscopy for structural biology.

Authors:  Rebecca F Thompson; Matt Walker; C Alistair Siebert; Stephen P Muench; Neil A Ranson
Journal:  Methods       Date:  2016-02-28       Impact factor: 3.608

9.  High-throughput in situ experimental phasing.

Authors:  Joshua M Lawrence; Julien Orlans; Gwyndaf Evans; Allen M Orville; James Foadi; Pierre Aller
Journal:  Acta Crystallogr D Struct Biol       Date:  2020-07-28       Impact factor: 7.652

10.  Using sound pulses to solve the crystal-harvesting bottleneck.

Authors:  Yasmin N Samara; Haley M Brennan; Liam McCarthy; Mary T Bollard; Denise Laspina; Jakub M Wlodek; Stefanie L Campos; Ramya Natarajan; Kazimierz Gofron; Sean McSweeney; Alexei S Soares; Ludmila Leroy
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-10-02       Impact factor: 7.652

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