Literature DB >> 19299141

The ribozyme core of group II introns: a structure in want of partners.

François Michel1, Maria Costa, Eric Westhof.   

Abstract

Group II introns contain a large ribozyme, which catalyzes self-splicing, and the coding sequence of a reverse transcriptase, the function of which is to cooperate with the ribozyme to achieve genomic mobility. Despite its lack of substrates for both steps of the splicing process, the crystal structure of a group II ribozyme reveals the location of two metal ions most likely to be involved in catalysis; the RNA structure that binds to these ions results from the bending of a local motif by the folding of the rest of the ribozyme. The stage is now set to determine where the intron-encoded protein binds to its partner and whether the spliceosome uses a counterpart of the group II catalytic center to excise nuclear pre-messenger introns.

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Year:  2009        PMID: 19299141     DOI: 10.1016/j.tibs.2008.12.007

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  43 in total

Review 1.  The tertiary structure of group II introns: implications for biological function and evolution.

Authors:  Anna Marie Pyle
Journal:  Crit Rev Biochem Mol Biol       Date:  2010-06       Impact factor: 8.250

Review 2.  Group II introns: mobile ribozymes that invade DNA.

Authors:  Alan M Lambowitz; Steven Zimmerly
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-08-01       Impact factor: 10.005

Review 3.  Predicting and modeling RNA architecture.

Authors:  Eric Westhof; Benoît Masquida; Fabrice Jossinet
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-02-01       Impact factor: 10.005

4.  DEAD-box protein facilitated RNA folding in vivo.

Authors:  Andreas Liebeg; Oliver Mayer; Christina Waldsich
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

Review 5.  Convergent evolution of twintron-like configurations: One is never enough.

Authors:  Mohamed Hafez; Georg Hausner
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

6.  RNA structure analysis of human spliceosomes reveals a compact 3D arrangement of snRNAs at the catalytic core.

Authors:  Maria Anokhina; Sergey Bessonov; Zhichao Miao; Eric Westhof; Klaus Hartmuth; Reinhard Lührmann
Journal:  EMBO J       Date:  2013-09-03       Impact factor: 11.598

7.  Tertiary architecture of the Oceanobacillus iheyensis group II intron.

Authors:  Navtej Toor; Kevin S Keating; Olga Fedorova; Kanagalaghatta Rajashankar; Jimin Wang; Anna Marie Pyle
Journal:  RNA       Date:  2009-12-01       Impact factor: 4.942

8.  Relevance of the branch point adenosine, coordination loop, and 3' exon binding site for in vivo excision of the Sinorhizobium meliloti group II intron RmInt1.

Authors:  María Dolores Molina-Sánchez; Antonio Barrientos-Durán; Nicolás Toro
Journal:  J Biol Chem       Date:  2011-04-26       Impact factor: 5.157

9.  Splicing of an intervening sequence by protein-free human snRNAs.

Authors:  Yasaman Jaladat; Bing Zhang; Afshin Mohammadi; Saba Valadkhan
Journal:  RNA Biol       Date:  2011-05-01       Impact factor: 4.652

10.  Enhanced group II intron retrohoming in magnesium-deficient Escherichia coli via selection of mutations in the ribozyme core.

Authors:  David M Truong; David J Sidote; Rick Russell; Alan M Lambowitz
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

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