Literature DB >> 7545072

Representation of the secondary and tertiary structure of group I introns.

T R Cech1, S H Damberger, R R Gutell.   

Abstract

Group I introns, which are widespread in nature, carry out RNA self-splicing. The secondary structure common to these introns was for the most part established a decade ago. Information about their higher order structure has been derived from a range of experimental approaches, comparative sequence analysis, and molecular modelling. This information now provides the basis for a new two-dimensional structural diagram that more accurately represents the domain organization and orientation of helices within the intron, the coaxial stacking of certain helices, and the proximity of key nucleotides in three-dimensional space. It is hoped that this format will facilitate the detailed comparison of group I intron structures.

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Year:  1994        PMID: 7545072     DOI: 10.1038/nsb0594-273

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  98 in total

1.  The yeast retrotransposon Ty5 uses the anticodon stem-loop of the initiator methionine tRNA as a primer for reverse transcription.

Authors:  N Ke; X Gao; J B Keeney; J D Boeke; D F Voytas
Journal:  RNA       Date:  1999-07       Impact factor: 4.942

2.  Influence of specific mutations on the thermal stability of the td group I intron in vitro and on its splicing efficiency in vivo: a comparative study.

Authors:  P Brion; R Schroeder; F Michel; E Westhof
Journal:  RNA       Date:  1999-07       Impact factor: 4.942

Review 3.  Maximizing RNA folding rates: a balancing act.

Authors:  D Thirumalai; S A Woodson
Journal:  RNA       Date:  2000-06       Impact factor: 4.942

4.  Novel group I intron in the tRNA(Leu)(UAA) gene of a gamma-proteobacterium isolated from a deep subsurface environment.

Authors:  Alexey A Vepritskiy; Inna A Vitol; Sandra A Nierzwicki-Bauer
Journal:  J Bacteriol       Date:  2002-03       Impact factor: 3.490

5.  Complex evolutionary patterns of tRNA Leu(UAA) group I introns in the cyanobacterial radiation [corrected].

Authors:  K Rudi; K S Jakobsen
Journal:  J Bacteriol       Date:  1999-06       Impact factor: 3.490

6.  Phylogeny and self-splicing ability of the plastid tRNA-Leu group I Intron.

Authors:  Dawn Simon; David Fewer; Thomas Friedl; Debashish Bhattacharya
Journal:  J Mol Evol       Date:  2003-12       Impact factor: 2.395

7.  Monitoring intermediate folding states of the td group I intron in vivo.

Authors:  Christina Waldsich; Benoît Masquida; Eric Westhof; Renée Schroeder
Journal:  EMBO J       Date:  2002-10-01       Impact factor: 11.598

8.  RNA chaperone StpA loosens interactions of the tertiary structure in the td group I intron in vivo.

Authors:  Christina Waldsich; Rupert Grossberger; Renée Schroeder
Journal:  Genes Dev       Date:  2002-09-01       Impact factor: 11.361

9.  Modular engineering of a Group I intron ribozyme.

Authors:  Shoji J Ohuchi; Yoshiya Ikawa; Hideaki Shiraishi; Tan Inoue
Journal:  Nucleic Acids Res       Date:  2002-08-01       Impact factor: 16.971

10.  Genetic organization of the psbAD region in phages infecting marine Synechococcus strains.

Authors:  Andrew Millard; Martha R J Clokie; David A Shub; Nicholas H Mann
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-19       Impact factor: 11.205

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