Literature DB >> 26496688

Mapping Proteome-Wide Targets of Environmental Chemicals Using Reactivity-Based Chemoproteomic Platforms.

Daniel Medina-Cleghorn1, Leslie A Bateman1, Breanna Ford1, Ann Heslin1, Karl J Fisher1, Esha D Dalvie1, Daniel K Nomura2.   

Abstract

We are exposed to a growing number of chemicals in our environment, most of which have not been characterized in terms of their toxicological potential or mechanisms. Here, we employ a chemoproteomic platform to map the cysteine reactivity of environmental chemicals using reactivity-based probes to mine for hyper-reactive hotspots across the proteome. We show that environmental contaminants such as monomethylarsonous acid and widely used pesticides such as chlorothalonil and chloropicrin possess common reactivity with a distinct set of proteins. Many of these proteins are involved in key metabolic processes, suggesting that these targets may be particularly sensitive to environmental electrophiles. We show that the widely used fungicide chlorothalonil specifically inhibits several metabolic enzymes involved in fatty acid metabolism and energetics, leading to dysregulated lipid metabolism in mice. Our results underscore the utility of using reactivity-based chemoproteomic platforms to uncover novel mechanistic insights into the toxicity of environmental chemicals.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26496688      PMCID: PMC4621755          DOI: 10.1016/j.chembiol.2015.09.008

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  40 in total

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2.  Regulatory forum opinion piece: Tox21 and toxicologic pathology.

Authors:  John R Bucher
Journal:  Toxicol Pathol       Date:  2012-06-12       Impact factor: 1.902

Review 3.  Basic biology of GAPDH.

Authors:  Norbert W Seidler
Journal:  Adv Exp Med Biol       Date:  2013       Impact factor: 2.622

Review 4.  Metabolism of arsenic and its toxicological relevance.

Authors:  Takayuki Watanabe; Seishiro Hirano
Journal:  Arch Toxicol       Date:  2012-07-19       Impact factor: 5.153

Review 5.  Deep mutational scanning: assessing protein function on a massive scale.

Authors:  Carlos L Araya; Douglas M Fowler
Journal:  Trends Biotechnol       Date:  2011-05-10       Impact factor: 19.536

6.  Activity-based protein profiling of organophosphorus and thiocarbamate pesticides reveals multiple serine hydrolase targets in mouse brain.

Authors:  Daniel K Nomura; John E Casida
Journal:  J Agric Food Chem       Date:  2010-07-21       Impact factor: 5.279

Review 7.  Diverse functional roles of reactive cysteines.

Authors:  Nicholas J Pace; Eranthie Weerapana
Journal:  ACS Chem Biol       Date:  2012-11-29       Impact factor: 5.100

8.  Monoacylglycerol lipase exerts dual control over endocannabinoid and fatty acid pathways to support prostate cancer.

Authors:  Daniel K Nomura; Donald P Lombardi; Jae Won Chang; Sherry Niessen; Anna M Ward; Jonathan Z Long; Heather H Hoover; Benjamin F Cravatt
Journal:  Chem Biol       Date:  2011-07-29

9.  Adductomics: characterizing exposures to reactive electrophiles.

Authors:  Stephen M Rappaport; He Li; Hasmik Grigoryan; William E Funk; Evan R Williams
Journal:  Toxicol Lett       Date:  2011-04-08       Impact factor: 4.372

10.  Ether lipid generating enzyme AGPS alters the balance of structural and signaling lipids to fuel cancer pathogenicity.

Authors:  Daniel I Benjamin; Alyssa Cozzo; Xiaodan Ji; Lindsay S Roberts; Sharon M Louie; Melinda M Mulvihill; Kunxin Luo; Daniel K Nomura
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-26       Impact factor: 11.205

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  14 in total

1.  Quantitative Chemical Proteomic Profiling of the in Vivo Targets of Reactive Drug Metabolites.

Authors:  Landon R Whitby; R Scott Obach; Gabriel M Simon; Matthew M Hayward; Benjamin F Cravatt
Journal:  ACS Chem Biol       Date:  2017-06-21       Impact factor: 5.100

2.  Covalent Ligand Discovery against Druggable Hotspots Targeted by Anti-cancer Natural Products.

Authors:  Elizabeth A Grossman; Carl C Ward; Jessica N Spradlin; Leslie A Bateman; Tucker R Huffman; David K Miyamoto; Jordan I Kleinman; Daniel K Nomura
Journal:  Cell Chem Biol       Date:  2017-09-14       Impact factor: 8.116

Review 3.  Sustainable exposure prevention through innovative detection and remediation technologies from the NIEHS Superfund Research Program.

Authors:  Heather F Henry; William A Suk
Journal:  Rev Environ Health       Date:  2017-03-01       Impact factor: 3.458

4.  Systematic and Quantitative Assessment of Hydrogen Peroxide Reactivity With Cysteines Across Human Proteomes.

Authors:  Ling Fu; Keke Liu; Mingan Sun; Caiping Tian; Rui Sun; Carlos Morales Betanzos; Keri A Tallman; Ned A Porter; Yong Yang; Dianjing Guo; Daniel C Liebler; Jing Yang
Journal:  Mol Cell Proteomics       Date:  2017-08-21       Impact factor: 5.911

5.  Covalent Ligand Screening Uncovers a RNF4 E3 Ligase Recruiter for Targeted Protein Degradation Applications.

Authors:  Carl C Ward; Jordan I Kleinman; Scott M Brittain; Patrick S Lee; Clive Yik Sham Chung; Kenneth Kim; Yana Petri; Jason R Thomas; John A Tallarico; Jeffrey M McKenna; Markus Schirle; Daniel K Nomura
Journal:  ACS Chem Biol       Date:  2019-05-13       Impact factor: 5.100

Review 6.  Activity-based protein profiling for mapping and pharmacologically interrogating proteome-wide ligandable hotspots.

Authors:  Allison M Roberts; Carl C Ward; Daniel K Nomura
Journal:  Curr Opin Biotechnol       Date:  2016-08-26       Impact factor: 9.740

7.  GSTP1 Is a Driver of Triple-Negative Breast Cancer Cell Metabolism and Pathogenicity.

Authors:  Sharon M Louie; Elizabeth A Grossman; Lisa A Crawford; Lucky Ding; Roman Camarda; Tucker R Huffman; David K Miyamoto; Andrei Goga; Eranthie Weerapana; Daniel K Nomura
Journal:  Cell Chem Biol       Date:  2016-05-12       Impact factor: 8.116

8.  A quantitative thiol reactivity profiling platform to analyze redox and electrophile reactive cysteine proteomes.

Authors:  Ling Fu; Zongmin Li; Keke Liu; Caiping Tian; Jixiang He; Jingyang He; Fuchu He; Ping Xu; Jing Yang
Journal:  Nat Protoc       Date:  2020-07-20       Impact factor: 13.491

9.  Metabolically Labile Fumarate Esters Impart Kinetic Selectivity to Irreversible Inhibitors.

Authors:  Balyn W Zaro; Landon R Whitby; Kenneth M Lum; Benjamin F Cravatt
Journal:  J Am Chem Soc       Date:  2016-12-05       Impact factor: 15.419

Review 10.  Mapping proteome-wide interactions of reactive chemicals using chemoproteomic platforms.

Authors:  Jessica L Counihan; Breanna Ford; Daniel K Nomura
Journal:  Curr Opin Chem Biol       Date:  2015-11-30       Impact factor: 8.822

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