Literature DB >> 26496388

How to Triage PAINS-Full Research.

Jayme L Dahlin1,2, Michael A Walters3.   

Abstract

Nonspecific bioactivity and assay artifacts have gained increasing attention in recent years. This focus has arisen primarily from the publication of a set of chemical substructures, termed pan assay interference compounds (PAINS), which are associated with promiscuous bioactivity and assay interference in real and virtual high-throughput screening (HTS) campaigns. Despite an increasing awareness in the HTS and medicinal chemistry communities about the liabilities of these compounds, articles featuring PAINS and PAINS-like compounds are still being published. In this perspective, we describe some of the factors we believe are driving this resource-sapping trend. We also provide what we hope are helpful insights that may lead to the earlier recognition of these generally nontranslatable compounds, thus preventing the propagation of PAINS-full costly research.

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Year:  2015        PMID: 26496388      PMCID: PMC4841006          DOI: 10.1089/adt.2015.674

Source DB:  PubMed          Journal:  Assay Drug Dev Technol        ISSN: 1540-658X            Impact factor:   1.738


  22 in total

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Review 2.  Screening in a spirit haunted world.

Authors:  Brian K Shoichet
Journal:  Drug Discov Today       Date:  2006-07       Impact factor: 7.851

Review 3.  Drugs for bad bugs: confronting the challenges of antibacterial discovery.

Authors:  David J Payne; Michael N Gwynn; David J Holmes; David L Pompliano
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4.  Singlet oxygen effects on lipid membranes: implications for the mechanism of action of broad-spectrum viral fusion inhibitors.

Authors:  Axel Hollmann; Miguel A R B Castanho; Benhur Lee; Nuno C Santos
Journal:  Biochem J       Date:  2014-04-01       Impact factor: 3.857

5.  Observations on screening-based research and some concerning trends in the literature.

Authors:  Jonathan B Baell
Journal:  Future Med Chem       Date:  2010-10       Impact factor: 3.808

6.  New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassays.

Authors:  Jonathan B Baell; Georgina A Holloway
Journal:  J Med Chem       Date:  2010-04-08       Impact factor: 7.446

7.  What is the likelihood of an active compound to be promiscuous? Systematic assessment of compound promiscuity on the basis of PubChem confirmatory bioassay data.

Authors:  Ye Hu; Jürgen Bajorath
Journal:  AAPS J       Date:  2013-04-19       Impact factor: 4.009

8.  Digital chemistry in the Journal of Medicinal Chemistry.

Authors:  Michael K Gilson; Gunda Georg; Shaomeng Wang
Journal:  J Med Chem       Date:  2014-02-12       Impact factor: 7.446

9.  Complementarity between a docking and a high-throughput screen in discovering new cruzain inhibitors.

Authors:  Rafaela S Ferreira; Anton Simeonov; Ajit Jadhav; Oliv Eidam; Bryan T Mott; Michael J Keiser; James H McKerrow; David J Maloney; John J Irwin; Brian K Shoichet
Journal:  J Med Chem       Date:  2010-07-08       Impact factor: 7.446

10.  Phytochemicals perturb membranes and promiscuously alter protein function.

Authors:  Helgi I Ingólfsson; Pratima Thakur; Karl F Herold; E Ashley Hobart; Nicole B Ramsey; Xavier Periole; Djurre H de Jong; Martijn Zwama; Duygu Yilmaz; Katherine Hall; Thorsten Maretzky; Hugh C Hemmings; Carl Blobel; Siewert J Marrink; Armağan Koçer; Jon T Sack; Olaf S Andersen
Journal:  ACS Chem Biol       Date:  2014-06-17       Impact factor: 5.100

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  27 in total

1.  The Ecstasy and Agony of Assay Interference Compounds.

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Journal:  ACS Med Chem Lett       Date:  2017-02-28       Impact factor: 4.345

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Journal:  J Biol Chem       Date:  2018-08-01       Impact factor: 5.157

3.  Functionalized 6-(Piperidin-1-yl)-8,9-Diphenyl Purines as Peripherally Restricted Inverse Agonists of the CB1 Receptor.

Authors:  George Amato; Amruta Manke; Robert Wiethe; Vineetha Vasukuttan; Rodney Snyder; Yun Lan Yueh; Ann Decker; Scott Runyon; Rangan Maitra
Journal:  J Med Chem       Date:  2019-06-22       Impact factor: 7.446

4.  New fluorescence-based high-throughput screening assay for small molecule inhibitors of tyrosyl-DNA phosphodiesterase 2 (TDP2).

Authors:  Carlos J A Ribeiro; Jayakanth Kankanala; Ke Shi; Kayo Kurahashi; Evgeny Kiselev; Azhar Ravji; Yves Pommier; Hideki Aihara; Zhengqiang Wang
Journal:  Eur J Pharm Sci       Date:  2018-03-21       Impact factor: 4.384

5.  Functionalized 6-(piperidin-1-yl)-8,9-diphenyl purines as inverse agonists of the CB1 receptor - SAR efforts towards selectivity and peripheralization.

Authors:  George Amato; Robert Wiethe; Amruta Manke; Vineetha Vasukuttan; Rodney Snyder; Scott Runyon; Rangan Maitra
Journal:  Bioorg Med Chem       Date:  2019-07-04       Impact factor: 3.641

6.  Creation of targeted compound libraries based on 3D shape recognition.

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Review 7.  Nuisance compounds in cellular assays.

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Journal:  Cell Chem Biol       Date:  2021-02-15       Impact factor: 8.116

Review 8.  Preparing (Metalla)carboranes for Nanomedicine.

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Journal:  ChemMedChem       Date:  2021-03-19       Impact factor: 3.466

Review 9.  Tumor pyruvate kinase M2 modulators: a comprehensive account of activators and inhibitors as anticancer agents.

Authors:  Bhagyashri Rathod; Shivam Chak; Sagarkumar Patel; Amit Shard
Journal:  RSC Med Chem       Date:  2021-05-17

Review 10.  Oximes: Novel Therapeutics with Anticancer and Anti-Inflammatory Potential.

Authors:  Igor A Schepetkin; Mark B Plotnikov; Andrei I Khlebnikov; Tatiana M Plotnikova; Mark T Quinn
Journal:  Biomolecules       Date:  2021-05-22
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