Literature DB >> 22084255

PubChem promiscuity: a web resource for gathering compound promiscuity data from PubChem.

Stephanie A Canny1, Yasel Cruz, Mark R Southern, Patrick R Griffin.   

Abstract

SUMMARY: Promiscuity counts allow for a better understanding of a compound's assay activity profile and drug potential. Although PubChem contains a vast amount of compound and assay data, it currently does not have a convenient or efficient method to obtain in-depth promiscuity counts for compounds. PubChem promiscuity fills this gap. It is a Java servlet that uses NCBI Entrez (eUtils) web services to interact with PubChem and provide promiscuity counts in a variety of categories along with compound descriptors, including PAINS-based functional group detection. AVAILABILITY: http://chemutils.florida.scripps.edu/pcpromiscuity CONTACT: southern@scripps.edu

Mesh:

Substances:

Year:  2011        PMID: 22084255      PMCID: PMC3276228          DOI: 10.1093/bioinformatics/btr622

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  11 in total

Review 1.  Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings.

Authors:  C A Lipinski; F Lombardo; B W Dominy; P J Feeney
Journal:  Adv Drug Deliv Rev       Date:  2001-03-01       Impact factor: 15.470

2.  NIH Molecular Libraries Initiative.

Authors:  Christopher P Austin; Linda S Brady; Thomas R Insel; Francis S Collins
Journal:  Science       Date:  2004-11-12       Impact factor: 47.728

Review 3.  PubChem as a public resource for drug discovery.

Authors:  Qingliang Li; Tiejun Cheng; Yanli Wang; Stephen H Bryant
Journal:  Drug Discov Today       Date:  2010-10-21       Impact factor: 7.851

4.  A Java API for working with PubChem datasets.

Authors:  Mark R Southern; Patrick R Griffin
Journal:  Bioinformatics       Date:  2011-01-06       Impact factor: 6.937

5.  The art of the chemical probe.

Authors:  Stephen V Frye
Journal:  Nat Chem Biol       Date:  2010-03       Impact factor: 15.040

6.  New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassays.

Authors:  Jonathan B Baell; Georgina A Holloway
Journal:  J Med Chem       Date:  2010-04-08       Impact factor: 7.446

7.  Quantitation of transcription and clonal selection of single living cells with beta-lactamase as reporter.

Authors:  G Zlokarnik; P A Negulescu; T E Knapp; L Mere; N Burres; L Feng; M Whitney; K Roemer; R Y Tsien
Journal:  Science       Date:  1998-01-02       Impact factor: 47.728

Review 8.  Bioluminescent assays for high-throughput screening.

Authors:  Frank Fan; Keith V Wood
Journal:  Assay Drug Dev Technol       Date:  2007-02       Impact factor: 1.738

9.  BioAssay ontology annotations facilitate cross-analysis of diverse high-throughput screening data sets.

Authors:  Stephan C Schürer; Uma Vempati; Robin Smith; Mark Southern; Vance Lemmon
Journal:  J Biomol Screen       Date:  2011-04

10.  Drug discovery using chemical systems biology: identification of the protein-ligand binding network to explain the side effects of CETP inhibitors.

Authors:  Li Xie; Jerry Li; Lei Xie; Philip E Bourne
Journal:  PLoS Comput Biol       Date:  2009-05-15       Impact factor: 4.475

View more
  15 in total

1.  How to Triage PAINS-Full Research.

Authors:  Jayme L Dahlin; Michael A Walters
Journal:  Assay Drug Dev Technol       Date:  2015-10-23       Impact factor: 1.738

2.  Post-HTS case report and structural alert: Promiscuous 4-aroyl-1,5-disubstituted-3-hydroxy-2H-pyrrol-2-one actives verified by ALARM NMR.

Authors:  Jayme L Dahlin; J Willem M Nissink; Subhashree Francis; Jessica M Strasser; Kristen John; Zhiguo Zhang; Michael A Walters
Journal:  Bioorg Med Chem Lett       Date:  2015-08-10       Impact factor: 2.823

3.  Computer-Aided Discovery and Characterization of Novel Ebola Virus Inhibitors.

Authors:  Stephen J Capuzzi; Wei Sun; Eugene N Muratov; Carles Martínez-Romero; Shihua He; Wenjun Zhu; Hao Li; Gregory Tawa; Ethan G Fisher; Miao Xu; Paul Shinn; Xiangguo Qiu; Adolfo García-Sastre; Wei Zheng; Alexander Tropsha
Journal:  J Med Chem       Date:  2018-04-17       Impact factor: 7.446

4.  7,8-Dihydroxyflavone attenuates the virulence of Staphylococcus aureus by inhibiting alpha-hemolysin.

Authors:  Nan Bian; Xiangqian Chen; Xinran Ren; Zishu Yu; Mengli Jin; Xiaoyu Chen; Chang Liu; Yanhe Luan; Lin Wei; Ying Chen; Wu Song; Yicheng Zhao; Bingmei Wang; Tao Jiang; Chi Zhang; Zunhua Shu; Xin Su; Li Wang
Journal:  World J Microbiol Biotechnol       Date:  2022-08-23       Impact factor: 4.253

Review 5.  Structure-based approaches to ligands for G-protein-coupled adenosine and P2Y receptors, from small molecules to nanoconjugates.

Authors:  Kenneth A Jacobson
Journal:  J Med Chem       Date:  2013-05-09       Impact factor: 7.446

Review 6.  The essential roles of chemistry in high-throughput screening triage.

Authors:  Jayme L Dahlin; Michael A Walters
Journal:  Future Med Chem       Date:  2014-07       Impact factor: 3.808

7.  Dealing with the Data Deluge: Handling the Multitude Of Chemical Biology Data Sources.

Authors:  Rajarshi Guha; Dac-Trung Nguyen; Noel Southall; Ajit Jadhav
Journal:  Curr Protoc Chem Biol       Date:  2012-09-01

8.  Vitexicarpin acts as a novel angiogenesis inhibitor and its target network.

Authors:  Bo Zhang; Lu Liu; Shiwen Zhao; Xu Wang; Liyang Liu; Shao Li
Journal:  Evid Based Complement Alternat Med       Date:  2013-02-12       Impact factor: 2.629

9.  A cell-free fluorometric high-throughput screen for inhibitors of Rtt109-catalyzed histone acetylation.

Authors:  Jayme L Dahlin; Rondedrick Sinville; Jonathan Solberg; Hui Zhou; Junhong Han; Subhashree Francis; Jessica M Strasser; Kristen John; Derek J Hook; Michael A Walters; Zhiguo Zhang
Journal:  PLoS One       Date:  2013-11-18       Impact factor: 3.240

10.  Unveiling new biological relationships using shared hits of chemical screening assay pairs.

Authors:  Xueping Liu; Monica Campillos
Journal:  Bioinformatics       Date:  2014-09-01       Impact factor: 6.937

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.