Literature DB >> 22771574

Experimental definition of a clustered regularly interspaced short palindromic duplicon in Escherichia coli.

Moran G Goren1, Ido Yosef, Oren Auster, Udi Qimron.   

Abstract

We analyzed sequences of newly inserted repeats in an Escherichia coli CRISPR (clustered regularly interspaced short palindromic repeats) array in vivo and showed that a base previously thought to belong to the repeat is actually derived from a protospacer. Based on further experimental results, we propose to use the term "duplicon" for a repeated sequence in a CRISPR array that serves as a template for a new duplicon. Our findings suggest the possibility of redrawing the borders between repeats, spacers, and protospacer adjacent motifs.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22771574     DOI: 10.1016/j.jmb.2012.06.037

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  30 in total

Review 1.  CRISPR-Cas immunity in prokaryotes.

Authors:  Luciano A Marraffini
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

Review 2.  CRISPR-Cas adaptation: insights into the mechanism of action.

Authors:  Gil Amitai; Rotem Sorek
Journal:  Nat Rev Microbiol       Date:  2016-01-11       Impact factor: 60.633

3.  DNA motifs determining the efficiency of adaptation into the Escherichia coli CRISPR array.

Authors:  Ido Yosef; Dror Shitrit; Moran G Goren; David Burstein; Tal Pupko; Udi Qimron
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-12       Impact factor: 11.205

Review 4.  The CRISPR-Cas9 system in Neisseria spp.

Authors:  Yan Zhang
Journal:  Pathog Dis       Date:  2017-06-01       Impact factor: 3.166

5.  In vitro reconstitution of Cascade-mediated CRISPR immunity in Streptococcus thermophilus.

Authors:  Tomas Sinkunas; Giedrius Gasiunas; Sakharam P Waghmare; Mark J Dickman; Rodolphe Barrangou; Philippe Horvath; Virginijus Siksnys
Journal:  EMBO J       Date:  2013-01-18       Impact factor: 11.598

6.  RcsB-BglJ-mediated activation of Cascade operon does not induce the maturation of CRISPR RNAs in E. coli K12.

Authors:  Zihni Arslan; Thomas Stratmann; Reinhild Wurm; Rolf Wagner; Karin Schnetz; Ümit Pul
Journal:  RNA Biol       Date:  2013-02-07       Impact factor: 4.652

7.  Processing and integration of functionally oriented prespacers in the Escherichia coli CRISPR system depends on bacterial host exonucleases.

Authors:  Anita Ramachandran; Lesley Summerville; Brian A Learn; Lily DeBell; Scott Bailey
Journal:  J Biol Chem       Date:  2019-12-30       Impact factor: 5.157

Review 8.  Mechanisms of Type I-E and I-F CRISPR-Cas Systems in Enterobacteriaceae.

Authors:  Chaoyou Xue; Dipali G Sashital
Journal:  EcoSal Plus       Date:  2019-02

9.  High-throughput analysis of type I-E CRISPR/Cas spacer acquisition in E. coli.

Authors:  Ekaterina Savitskaya; Ekaterina Semenova; Vladimir Dedkov; Anastasia Metlitskaya; Konstantin Severinov
Journal:  RNA Biol       Date:  2013-04-25       Impact factor: 4.652

10.  In vitro reconstitution of an Escherichia coli RNA-guided immune system reveals unidirectional, ATP-dependent degradation of DNA target.

Authors:  Sabin Mulepati; Scott Bailey
Journal:  J Biol Chem       Date:  2013-06-11       Impact factor: 5.157

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