Literature DB >> 26407607

Preparation of highly and generally enriched mammalian tissues for solid state NMR.

Veronica Wai Ching Wong1, David G Reid1, Wing Ying Chow1, Rakesh Rajan1, Maggie Green2, Roger A Brooks3, Melinda J Duer4.   

Abstract

An appreciable level of isotope labelling is essential for future NMR structure elucidation of mammalian biomaterials, which are either poorly expressed, or unexpressable, using micro-organisms. We present a detailed protocol for high level (13)C enrichment even in slow turnover murine biomaterials (fur keratin), using a customized diet supplemented with commercial labelled algal hydrolysate and formulated as a gel to minimize wastage, which female mice consumed during pregnancy and lactation. This procedure produced approximately eightfold higher fur keratin labelling in pups, exposed in utero and throughout life to label, than in adults exposed for the same period, showing both the effectiveness, and necessity, of this approach.

Entities:  

Keywords:  Bone collagen; Carbon-13; Fur keratin; In vivo; Labelling; Mouse

Mesh:

Substances:

Year:  2015        PMID: 26407607     DOI: 10.1007/s10858-015-9977-9

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  13 in total

1.  15N metabolic labeling of mammalian tissue with slow protein turnover.

Authors:  Daniel B McClatchy; Meng-Qiu Dong; Christine C Wu; John D Venable; John R Yates
Journal:  J Proteome Res       Date:  2007-03-22       Impact factor: 4.466

2.  Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development.

Authors:  Daniel B McClatchy; Lujian Liao; Sung Kyu Park; John D Venable; John R Yates
Journal:  Genome Res       Date:  2007-08-03       Impact factor: 9.043

3.  NMR investigation of the role of osteocalcin and osteopontin at the organic-inorganic interface in bone.

Authors:  Ondřej Nikel; Danielle Laurencin; Scott A McCallum; Caren M Gundberg; Deepak Vashishth
Journal:  Langmuir       Date:  2013-11-01       Impact factor: 3.882

4.  Uniformly 13C-labeled algal protein used to determine amino acid essentiality in vivo.

Authors:  H K Berthold; D L Hachey; P J Reeds; O P Thomas; S Hoeksema; P D Klein
Journal:  Proc Natl Acad Sci U S A       Date:  1991-09-15       Impact factor: 11.205

Review 5.  Isotope labeling for solution and solid-state NMR spectroscopy of membrane proteins.

Authors:  Raffaello Verardi; Nathaniel J Traaseth; Larry R Masterson; Vitaly V Vostrikov; Gianluigi Veglia
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

6.  Solid state 13C NMR study of collagen molecular dynamics in hard and soft tissues.

Authors:  S K Sarkar; C E Sullivan; D A Torchia
Journal:  J Biol Chem       Date:  1983-08-25       Impact factor: 5.157

7.  Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis.

Authors:  Christine C Wu; Michael J MacCoss; Kathryn E Howell; Dwight E Matthews; John R Yates
Journal:  Anal Chem       Date:  2004-09-01       Impact factor: 6.986

8.  Molecular dynamics of collagen side chains in hard and soft tissues. A multinuclear magnetic resonance study.

Authors:  S K Sarkar; Y Hiyama; C H Niu; P E Young; J T Gerig; D A Torchia
Journal:  Biochemistry       Date:  1987-10-20       Impact factor: 3.162

9.  Nanosecond fluctuations of the molecular backbone of collagen in hard and soft tissues: a carbon-13 nuclear magnetic resonance relaxation study.

Authors:  S K Sarkar; C E Sullivan; D A Torchia
Journal:  Biochemistry       Date:  1985-04-23       Impact factor: 3.162

10.  NMR spectroscopy of native and in vitro tissues implicates polyADP ribose in biomineralization.

Authors:  W Ying Chow; Rakesh Rajan; Karin H Muller; David G Reid; Jeremy N Skepper; Wai Ching Wong; Roger A Brooks; Maggie Green; Dominique Bihan; Richard W Farndale; David A Slatter; Catherine M Shanahan; Melinda J Duer
Journal:  Science       Date:  2014-05-16       Impact factor: 47.728

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  6 in total

1.  Algal autolysate medium to label proteins for NMR in mammalian cells.

Authors:  Carmelo Fuccio; Enrico Luchinat; Letizia Barbieri; Sara Neri; Marco Fragai
Journal:  J Biomol NMR       Date:  2016-04-22       Impact factor: 2.835

Review 2.  Insights into protein misfolding and aggregation enabled by solid-state NMR spectroscopy.

Authors:  Patrick C A van der Wel
Journal:  Solid State Nucl Magn Reson       Date:  2017-10-04       Impact factor: 2.293

3.  Proline provides site-specific flexibility for in vivo collagen.

Authors:  Wing Ying Chow; Chris J Forman; Dominique Bihan; Anna M Puszkarska; Rakesh Rajan; David G Reid; David A Slatter; Lucy J Colwell; David J Wales; Richard W Farndale; Melinda J Duer
Journal:  Sci Rep       Date:  2018-09-14       Impact factor: 4.379

4.  Development of in vitro-grown spheroids as a 3D tumor model system for solid-state NMR spectroscopy.

Authors:  Reinier Damman; Alessandra Lucini Paioni; Katerina T Xenaki; Irati Beltrán Hernández; Paul M P van Bergen En Henegouwen; Marc Baldus
Journal:  J Biomol NMR       Date:  2020-06-19       Impact factor: 2.835

5.  Detection of nucleic acids and other low abundance components in native bone and osteosarcoma extracellular matrix by isotope enrichment and DNP-enhanced NMR.

Authors:  Ieva Goldberga; Rui Li; Wing Ying Chow; David G Reid; Ulyana Bashtanova; Rakesh Rajan; Anna Puszkarska; Hartmut Oschkinat; Melinda J Duer
Journal:  RSC Adv       Date:  2019-08-27       Impact factor: 4.036

6.  Solid state NMR of isotope labelled murine fur: a powerful tool to study atomic level keratin structure and treatment effects.

Authors:  Wai Ching Veronica Wong; Aurimas Narkevicius; Wing Ying Chow; David G Reid; Rakesh Rajan; Roger A Brooks; Maggie Green; Melinda J Duer
Journal:  J Biomol NMR       Date:  2016-10-03       Impact factor: 2.835

  6 in total

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