Literature DB >> 3427044

Molecular dynamics of collagen side chains in hard and soft tissues. A multinuclear magnetic resonance study.

S K Sarkar1, Y Hiyama, C H Niu, P E Young, J T Gerig, D A Torchia.   

Abstract

We have prepared samples of (a) intact calvaria collagen (cross-linked and mineralized), (b) intact tendon collagen (cross-linked but not mineralized), and (c) reconstituted chick calvaria collagen (not cross-linked and not mineralized) containing [methyl-2H3]methionyl, [4,4-2H2]pyrrolidinyl, (4-fluorophenyl)alanyl, and [6-15N]lysyl residues. Using multinuclear magnetic resonance spectroscopy, we have investigated the molecular dynamics of the labeled amino acids. Guided by model compound studies, we reached the following conclusions regarding collagen side chain dynamics from our analysis of line shapes and relaxation rates. At 22 degrees C, imino residues in all samples have flexible rings with root mean square angular fluctuations in the 11-30 degree range. Nearly all labeled amino acid side chains reorient about at least two side chain single bonds. At temperatures below -30 degrees C, most of these side chain motions are absent in all the samples. Surprisingly, in contrast with results obtained for backbone motions, side chain motions are only marginally more hindered in mineralized samples as compared with nonmineralized samples, a result we discuss with reference to collagen-mineral interactions. We also discuss the possible relationship between collagen dynamics and function.

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Year:  1987        PMID: 3427044     DOI: 10.1021/bi00395a032

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  11 in total

1.  Evidence that collagen fibrils in tendons are inhomogeneously structured in a tubelike manner.

Authors:  Thomas Gutsmann; Georg E Fantner; Manuela Venturoni; Axel Ekani-Nkodo; James B Thompson; Johannes H Kindt; Daniel E Morse; Deborah Kuchnir Fygenson; Paul K Hansma
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

2.  Effect of mineral content on the nanoindentation properties and nanoscale deformation mechanisms of bovine tibial cortical bone.

Authors:  Kuangshin Tai; Hang J Qi; Christine Ortiz
Journal:  J Mater Sci Mater Med       Date:  2005-10       Impact factor: 3.896

3.  Conformational dynamics of an intact virus: order parameters for the coat protein of Pf1 bacteriophage.

Authors:  Justin L Lorieau; Loren A Day; Ann E McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-24       Impact factor: 11.205

4.  Actin dynamics studied by solid-state NMR spectroscopy.

Authors:  L Phillips; F Separovic; B A Cornell; J A Barden; C G dos Remedios
Journal:  Eur Biophys J       Date:  1991       Impact factor: 1.733

Review 5.  NMR Methods for Characterizing the Basic Side Chains of Proteins: Electrostatic Interactions, Hydrogen Bonds, and Conformational Dynamics.

Authors:  Dan Nguyen; Chuanying Chen; B Montgomery Pettitt; Junji Iwahara
Journal:  Methods Enzymol       Date:  2018-09-27       Impact factor: 1.600

6.  Quantitative (31)P NMR spectroscopy and (1)H MRI measurements of bone mineral and matrix density differentiate metabolic bone diseases in rat models.

Authors:  Haihui Cao; Ara Nazarian; Jerome L Ackerman; Brian D Snyder; Andrew E Rosenberg; Rosalynn M Nazarian; Mirko I Hrovat; Guangping Dai; Dionyssios Mintzopoulos; Yaotang Wu
Journal:  Bone       Date:  2010-02-24       Impact factor: 4.398

7.  Cryptic binding sites become accessible through surface reconstruction of the type I collagen fibril.

Authors:  Jie Zhu; Cody L Hoop; David A Case; Jean Baum
Journal:  Sci Rep       Date:  2018-11-09       Impact factor: 4.379

8.  Preparation of highly and generally enriched mammalian tissues for solid state NMR.

Authors:  Veronica Wai Ching Wong; David G Reid; Wing Ying Chow; Rakesh Rajan; Maggie Green; Roger A Brooks; Melinda J Duer
Journal:  J Biomol NMR       Date:  2015-09-25       Impact factor: 2.835

Review 9.  New methods to study the composition and structure of the extracellular matrix in natural and bioengineered tissues.

Authors:  Jürgen Schiller; Daniel Huster
Journal:  Biomatter       Date:  2012 Jul-Sep

10.  Hydroxyproline Ring Pucker Causes Frustration of Helix Parameters in the Collagen Triple Helix.

Authors:  W Ying Chow; Dominique Bihan; Chris J Forman; David A Slatter; David G Reid; David J Wales; Richard W Farndale; Melinda J Duer
Journal:  Sci Rep       Date:  2015-07-29       Impact factor: 4.379

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