Literature DB >> 26393866

From Brain Maps to Cognitive Ontologies: Informatics and the Search for Mental Structure.

Russell A Poldrack1, Tal Yarkoni2.   

Abstract

A major goal of cognitive neuroscience is to delineate how brain systems give rise to mental function. Here we review the increasingly large role informatics-driven approaches are playing in such efforts. We begin by reviewing a number of challenges conventional neuroimaging approaches face in trying to delineate brain-cognition mappings--for example, the difficulty in establishing the specificity of postulated associations. Next, we demonstrate how these limitations can potentially be overcome using complementary approaches that emphasize large-scale analysis--including meta-analytic methods that synthesize hundreds or thousands of studies at a time; latent-variable approaches that seek to extract structure from data in a bottom-up manner; and predictive modeling approaches capable of quantitatively inferring mental states from patterns of brain activity. We highlight the underappreciated but critical role for formal cognitive ontologies in helping to clarify, refine, and test theories of brain and cognitive function. Finally, we conclude with a speculative discussion of what future informatics developments may hold for cognitive neuroscience.

Entities:  

Keywords:  classification; cognition; meta-analysis; neuroimaging; neuroinformatics; ontologies

Mesh:

Year:  2015        PMID: 26393866      PMCID: PMC4701616          DOI: 10.1146/annurev-psych-122414-033729

Source DB:  PubMed          Journal:  Annu Rev Psychol        ISSN: 0066-4308            Impact factor:   24.137


  77 in total

1.  Meta-analysis of the functional neuroanatomy of single-word reading: method and validation.

Authors:  Peter E Turkeltaub; Guinevere F Eden; Karen M Jones; Thomas A Zeffiro
Journal:  Neuroimage       Date:  2002-07       Impact factor: 6.556

2.  Functional magnetic resonance imaging (fMRI) "brain reading": detecting and classifying distributed patterns of fMRI activity in human visual cortex.

Authors:  David D Cox; Robert L Savoy
Journal:  Neuroimage       Date:  2003-06       Impact factor: 6.556

Review 3.  Inhibition and the right inferior frontal cortex.

Authors:  Adam R Aron; Trevor W Robbins; Russell A Poldrack
Journal:  Trends Cogn Sci       Date:  2004-04       Impact factor: 20.229

4.  Algorithm discovery by protein folding game players.

Authors:  Firas Khatib; Seth Cooper; Michael D Tyka; Kefan Xu; Ilya Makedon; Zoran Popovic; David Baker; Foldit Players
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-07       Impact factor: 11.205

5.  Beyond mind-reading: multi-voxel pattern analysis of fMRI data.

Authors:  Kenneth A Norman; Sean M Polyn; Greg J Detre; James V Haxby
Journal:  Trends Cogn Sci       Date:  2006-08-08       Impact factor: 20.229

Review 6.  Decoding mental states from brain activity in humans.

Authors:  John-Dylan Haynes; Geraint Rees
Journal:  Nat Rev Neurosci       Date:  2006-07       Impact factor: 34.870

7.  Inferring mental states from neuroimaging data: from reverse inference to large-scale decoding.

Authors:  Russell A Poldrack
Journal:  Neuron       Date:  2011-12-08       Impact factor: 17.173

8.  Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in python.

Authors:  Krzysztof Gorgolewski; Christopher D Burns; Cindee Madison; Dav Clark; Yaroslav O Halchenko; Michael L Waskom; Satrajit S Ghosh
Journal:  Front Neuroinform       Date:  2011-08-22       Impact factor: 4.081

9.  Identifying natural images from human brain activity.

Authors:  Kendrick N Kay; Thomas Naselaris; Ryan J Prenger; Jack L Gallant
Journal:  Nature       Date:  2008-03-05       Impact factor: 49.962

10.  Using FMRI brain activation to identify cognitive states associated with perception of tools and dwellings.

Authors:  Svetlana V Shinkareva; Robert A Mason; Vicente L Malave; Wei Wang; Tom M Mitchell; Marcel Adam Just
Journal:  PLoS One       Date:  2008-01-02       Impact factor: 3.240

View more
  79 in total

1.  The modular and integrative functional architecture of the human brain.

Authors:  Maxwell A Bertolero; B T Thomas Yeo; Mark D'Esposito
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

2.  Regional specialization within the human striatum for diverse psychological functions.

Authors:  Wolfgang M Pauli; Randall C O'Reilly; Tal Yarkoni; Tor D Wager
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-01       Impact factor: 11.205

3.  Data-Driven Extraction of a Nested Model of Human Brain Function.

Authors:  Taylor Bolt; Jason S Nomi; B T Thomas Yeo; Lucina Q Uddin
Journal:  J Neurosci       Date:  2017-06-20       Impact factor: 6.167

4.  Beyond consensus: Embracing heterogeneity in curated neuroimaging meta-analysis.

Authors:  Gia H Ngo; Simon B Eickhoff; Minh Nguyen; Gunes Sevinc; Peter T Fox; R Nathan Spreng; B T Thomas Yeo
Journal:  Neuroimage       Date:  2019-06-20       Impact factor: 6.556

Review 5.  A new look at domain specificity: insights from social neuroscience.

Authors:  Robert P Spunt; Ralph Adolphs
Journal:  Nat Rev Neurosci       Date:  2017-07-06       Impact factor: 34.870

6.  Contributions of the Central Extended Amygdala to Fear and Anxiety.

Authors:  Alexander J Shackman; Andrew S Fox
Journal:  J Neurosci       Date:  2016-08-03       Impact factor: 6.167

7.  From Description to Explanation: Integrating Across Multiple Levels of Analysis to Inform Neuroscientific Accounts of Dimensional Personality Pathology.

Authors:  Timothy A Allen; Alison M Schreiber; Nathan T Hall; Michael N Hallquist
Journal:  J Pers Disord       Date:  2020-10

Review 8.  Are the Neural Correlates of Consciousness in the Front or in the Back of the Cerebral Cortex? Clinical and Neuroimaging Evidence.

Authors:  Melanie Boly; Marcello Massimini; Naotsugu Tsuchiya; Bradley R Postle; Christof Koch; Giulio Tononi
Journal:  J Neurosci       Date:  2017-10-04       Impact factor: 6.167

9.  Semantically defined subdomains of functional neuroimaging literature and their corresponding brain regions.

Authors:  Fahd H Alhazmi; Derek Beaton; Hervé Abdi
Journal:  Hum Brain Mapp       Date:  2018-03-25       Impact factor: 5.038

10.  Single-case cognitive neuropsychology in the age of big data.

Authors:  Jared Medina; Simon Fischer-Baum
Journal:  Cogn Neuropsychol       Date:  2017-05-17       Impact factor: 2.468

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.