Literature DB >> 26392565

Thermodynamics of protein destabilization in live cells.

Jens Danielsson1, Xin Mu2, Lisa Lang2, Huabing Wang2, Andres Binolfi3, François-Xavier Theillet3, Beata Bekei3, Derek T Logan4, Philipp Selenko3, Håkan Wennerström5, Mikael Oliveberg1.   

Abstract

Although protein folding and stability have been well explored under simplified conditions in vitro, it is yet unclear how these basic self-organization events are modulated by the crowded interior of live cells. To find out, we use here in-cell NMR to follow at atomic resolution the thermal unfolding of a β-barrel protein inside mammalian and bacterial cells. Challenging the view from in vitro crowding effects, we find that the cells destabilize the protein at 37 °C but with a conspicuous twist: While the melting temperature goes down the cold unfolding moves into the physiological regime, coupled to an augmented heat-capacity change. The effect seems induced by transient, sequence-specific, interactions with the cellular components, acting preferentially on the unfolded ensemble. This points to a model where the in vivo influence on protein behavior is case specific, determined by the individual protein's interplay with the functionally optimized "interaction landscape" of the cellular interior.

Entities:  

Keywords:  NMR; crowding; in vivo; protein stability; thermodynamics

Mesh:

Substances:

Year:  2015        PMID: 26392565      PMCID: PMC4603463          DOI: 10.1073/pnas.1511308112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  65 in total

1.  Maximal stabilities of reversible two-state proteins.

Authors:  Sandeep Kumar; Chung-Jung Tsai; Ruth Nussinov
Journal:  Biochemistry       Date:  2002-04-30       Impact factor: 3.162

2.  The diffusion coefficient for PGK folding in eukaryotic cells.

Authors:  Apratim Dhar; Simon Ebbinghaus; Zhen Shen; Tripta Mishra; Martin Gruebele
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

3.  DNA search efficiency is modulated by charge composition and distribution in the intrinsically disordered tail.

Authors:  Dana Vuzman; Yaakov Levy
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-15       Impact factor: 11.205

4.  Protein stability and folding kinetics in the nucleus and endoplasmic reticulum of eucaryotic cells.

Authors:  A Dhar; K Girdhar; D Singh; H Gelman; S Ebbinghaus; M Gruebele
Journal:  Biophys J       Date:  2011-07-20       Impact factor: 4.033

5.  Quinary structure modulates protein stability in cells.

Authors:  William B Monteith; Rachel D Cohen; Austin E Smith; Emilio Guzman-Cisneros; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-26       Impact factor: 11.205

6.  Residue level quantification of protein stability in living cells.

Authors:  William B Monteith; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-21       Impact factor: 11.205

7.  Volume changes in protein evolution.

Authors:  M Gerstein; E L Sonnhammer; C Chothia
Journal:  J Mol Biol       Date:  1994-03-04       Impact factor: 5.469

8.  Progressive aggregation despite chaperone associations of a mutant SOD1-YFP in transgenic mice that develop ALS.

Authors:  Jiou Wang; George W Farr; Caroline J Zeiss; Diego J Rodriguez-Gil; Jean H Wilson; Krystyna Furtak; D Thomas Rutkowski; Randal J Kaufman; Cristian I Ruse; John R Yates; Steve Perrin; Mel B Feany; Arthur L Horwich
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-26       Impact factor: 11.205

9.  Pruning the ALS-associated protein SOD1 for in-cell NMR.

Authors:  Jens Danielsson; Kohsuke Inomata; Shuhei Murayama; Hidehito Tochio; Lisa Lang; Masahiro Shirakawa; Mikael Oliveberg
Journal:  J Am Chem Soc       Date:  2013-07-08       Impact factor: 15.419

10.  Initiation and elongation in fibrillation of ALS-linked superoxide dismutase.

Authors:  Madhuri Chattopadhyay; Armando Durazo; Se Hui Sohn; Cynthia D Strong; Edith B Gralla; Julian P Whitelegge; Joan Selverstone Valentine
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-20       Impact factor: 11.205

View more
  58 in total

1.  In-cell thermodynamics and a new role for protein surfaces.

Authors:  Austin E Smith; Larry Z Zhou; Annelise H Gorensek; Michael Senske; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-11       Impact factor: 11.205

2.  Osmotic Shock Induced Protein Destabilization in Living Cells and Its Reversal by Glycine Betaine.

Authors:  Samantha S Stadmiller; Annelise H Gorensek-Benitez; Alex J Guseman; Gary J Pielak
Journal:  J Mol Biol       Date:  2017-03-03       Impact factor: 5.469

3.  Ribosome Mediated Quinary Interactions Modulate In-Cell Protein Activities.

Authors:  Christopher M DeMott; Subhabrata Majumder; David S Burz; Sergey Reverdatto; Alexander Shekhtman
Journal:  Biochemistry       Date:  2017-08-03       Impact factor: 3.162

4.  A new carbamidemethyl-linked lanthanoid chelating tag for PCS NMR spectroscopy of proteins in living HeLa cells.

Authors:  Yuya Hikone; Go Hirai; Masaki Mishima; Kohsuke Inomata; Teppei Ikeya; Souichiro Arai; Masahiro Shirakawa; Mikiko Sodeoka; Yutaka Ito
Journal:  J Biomol NMR       Date:  2016-09-08       Impact factor: 2.835

5.  Protecting activity of desiccated enzymes.

Authors:  Samantha Piszkiewicz; Kathryn H Gunn; Owen Warmuth; Ashlee Propst; Aakash Mehta; Kenny H Nguyen; Elizabeth Kuhlman; Alex J Guseman; Samantha S Stadmiller; Thomas C Boothby; Saskia B Neher; Gary J Pielak
Journal:  Protein Sci       Date:  2019-03-30       Impact factor: 6.725

Review 6.  A cell is more than the sum of its (dilute) parts: A brief history of quinary structure.

Authors:  Rachel D Cohen; Gary J Pielak
Journal:  Protein Sci       Date:  2017-02-13       Impact factor: 6.725

7.  Quantifying enzyme activity in living cells.

Authors:  Agnes Zotter; Felix Bäuerle; Debabrata Dey; Vladimir Kiss; Gideon Schreiber
Journal:  J Biol Chem       Date:  2017-08-07       Impact factor: 5.157

8.  Design and Properties of Genetically Encoded Probes for Sensing Macromolecular Crowding.

Authors:  Boqun Liu; Christoffer Åberg; Floris J van Eerden; Siewert J Marrink; Bert Poolman; Arnold J Boersma
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

9.  Physicochemical code for quinary protein interactions in Escherichia coli.

Authors:  Xin Mu; Seongil Choi; Lisa Lang; David Mowray; Nikolay V Dokholyan; Jens Danielsson; Mikael Oliveberg
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-23       Impact factor: 11.205

10.  Quinary interactions with an unfolded state ensemble.

Authors:  Rachel D Cohen; Gary J Pielak
Journal:  Protein Sci       Date:  2017-06-12       Impact factor: 6.725

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.