Literature DB >> 11969396

Maximal stabilities of reversible two-state proteins.

Sandeep Kumar1, Chung-Jung Tsai, Ruth Nussinov.   

Abstract

The hydrophobic effect is the major force driving protein folding. Around room temperature, small organic solutes and hydrophobic amino acids have low solubilities in water and the hydrophobic effect is the strongest. These facts suggest that globular proteins should be maximally stable around room temperature. While this fundamental paradigm has been expected, it has not actually been shown to hold. Toward this goal, we have collected and analyzed experimental thermodynamic data for 31 proteins that show reversible two-state folding <--> unfolding transitions at or near neutral pH. Twenty-six of these are unique, and 20 of the 26 are maximally stable around room temperature irrespective of their structural properties, the melting temperature, or the living temperatures of their source organisms. Their average temperature of maximal stability is 293 +/- 8 K (20 +/- 8 degrees C). These proteins differ in size, fold, and number of domains, hydrophobic folding units, and oligomeric states. They derive from the cold-loving psychrophiles, from mesophiles, and from thermophiles. Analysis of the single-domain proteins present in this set shows that the variations in their thermodynamic parameters are correlated in a way which may explain the adaptation of the proteins to the living temperatures of the organisms from which they derive. The average energetic contribution of the individual amino acids toward protein stability decreases with an increase in protein size, suggesting that there may be an upper limit for protein maximal thermodynamic stability. For the remaining proteins, deviation of the maximal stability temperatures from room temperature may be due to greater uncertainties in their heat capacity change (DeltaC(p)) values, a weaker hydrophobic effect, and/or a stronger electrostatic contribution.

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Year:  2002        PMID: 11969396     DOI: 10.1021/bi012154c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  21 in total

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Authors:  Mandar T Naik; Tai-Huang Huang
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2.  Thermodynamics of protein destabilization in live cells.

Authors:  Jens Danielsson; Xin Mu; Lisa Lang; Huabing Wang; Andres Binolfi; François-Xavier Theillet; Beata Bekei; Derek T Logan; Philipp Selenko; Håkan Wennerström; Mikael Oliveberg
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

3.  The active site is the least stable structure in the unfolding pathway of a multidomain cold-adapted alpha-amylase.

Authors:  Khawar S Siddiqui; Georges Feller; Salvino D'Amico; Charles Gerday; Laura Giaquinto; Ricardo Cavicchioli
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

Review 4.  Life at low temperatures: is disorder the driving force?

Authors:  Georges Feller
Journal:  Extremophiles       Date:  2006-12-08       Impact factor: 2.395

Review 5.  Cold-adapted enzymes from marine Antarctic microorganisms.

Authors:  J-C Marx; T Collins; S D'Amico; G Feller; C Gerday
Journal:  Mar Biotechnol (NY)       Date:  2006-12-29       Impact factor: 3.619

6.  Enthalpic and entropic contributions mediate the role of disulfide bonds on the conformational stability of interleukin-4.

Authors:  Daniela C Vaz; J Rui Rodrigues; Walter Sebald; Christopher M Dobson; Rui M M Brito
Journal:  Protein Sci       Date:  2006-01       Impact factor: 6.725

7.  Contribution of charged groups to the enthalpic stabilization of the folded states of globular proteins.

Authors:  Voichita M Dadarlat; Carol Beth Post
Journal:  J Phys Chem B       Date:  2008-02-28       Impact factor: 2.991

Review 8.  Coping with our cold planet.

Authors:  Debora Frigi Rodrigues; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2008-01-18       Impact factor: 4.792

9.  Role of disulfide bridges in the activity and stability of a cold-active alpha-amylase.

Authors:  Khawar Sohail Siddiqui; Anne Poljak; Michael Guilhaus; Georges Feller; Salvino D'Amico; Charles Gerday; Ricardo Cavicchioli
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

Review 10.  Non-Arrhenius protein aggregation.

Authors:  Wei Wang; Christopher J Roberts
Journal:  AAPS J       Date:  2013-04-25       Impact factor: 4.009

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