Literature DB >> 26364863

The Function Biomedical Informatics Research Network Data Repository.

David B Keator1, Theo G M van Erp2, Jessica A Turner3, Gary H Glover4, Bryon A Mueller5, Thomas T Liu6, James T Voyvodic7, Jerod Rasmussen2, Vince D Calhoun8, Hyo Jong Lee9, Arthur W Toga10, Sarah McEwen11, Judith M Ford12, Daniel H Mathalon12, Michele Diaz13, Daniel S O'Leary14, H Jeremy Bockholt15, Syam Gadde7, Adrian Preda2, Cynthia G Wible16, Hal S Stern17, Aysenil Belger18, Gregory McCarthy19, Burak Ozyurt20, Steven G Potkin2.   

Abstract

The Function Biomedical Informatics Research Network (FBIRN) developed methods and tools for conducting multi-scanner functional magnetic resonance imaging (fMRI) studies. Method and tool development were based on two major goals: 1) to assess the major sources of variation in fMRI studies conducted across scanners, including instrumentation, acquisition protocols, challenge tasks, and analysis methods, and 2) to provide a distributed network infrastructure and an associated federated database to host and query large, multi-site, fMRI and clinical data sets. In the process of achieving these goals the FBIRN test bed generated several multi-scanner brain imaging data sets to be shared with the wider scientific community via the BIRN Data Repository (BDR). The FBIRN Phase 1 data set consists of a traveling subject study of 5 healthy subjects, each scanned on 10 different 1.5 to 4 T scanners. The FBIRN Phase 2 and Phase 3 data sets consist of subjects with schizophrenia or schizoaffective disorder along with healthy comparison subjects scanned at multiple sites. In this paper, we provide concise descriptions of FBIRN's multi-scanner brain imaging data sets and details about the BIRN Data Repository instance of the Human Imaging Database (HID) used to publicly share the data.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26364863      PMCID: PMC4651841          DOI: 10.1016/j.neuroimage.2015.09.003

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  46 in total

Review 1.  Report on a multicenter fMRI quality assurance protocol.

Authors:  Lee Friedman; Gary H Glover
Journal:  J Magn Reson Imaging       Date:  2006-06       Impact factor: 4.813

2.  Reducing inter-scanner variability of activation in a multicenter fMRI study: role of smoothness equalization.

Authors:  Lee Friedman; Gary H Glover; Diana Krenz; Vince Magnotta
Journal:  Neuroimage       Date:  2006-07-27       Impact factor: 6.556

Review 3.  Function biomedical informatics research network recommendations for prospective multicenter functional MRI studies.

Authors:  Gary H Glover; Bryon A Mueller; Jessica A Turner; Theo G M van Erp; Thomas T Liu; Douglas N Greve; James T Voyvodic; Jerod Rasmussen; Gregory G Brown; David B Keator; Vince D Calhoun; Hyo Jong Lee; Judith M Ford; Daniel H Mathalon; Michele Diaz; Daniel S O'Leary; Syam Gadde; Adrian Preda; Kelvin O Lim; Cynthia G Wible; Hal S Stern; Aysenil Belger; Gregory McCarthy; Burak Ozyurt; Steven G Potkin
Journal:  J Magn Reson Imaging       Date:  2012-02-07       Impact factor: 4.813

4.  Federated web-accessible clinical data management within an extensible neuroimaging database.

Authors:  I Burak Ozyurt; David B Keator; Dingying Wei; Christine Fennema-Notestine; Karen R Pease; Jeremy Bockholt; Jeffrey S Grethe
Journal:  Neuroinformatics       Date:  2010-12

5.  Cortical thickness maturation and duration of music training: health-promoting activities shape brain development.

Authors:  James J Hudziak; Matthew D Albaugh; Simon Ducharme; Sherif Karama; Margaret Spottswood; Eileen Crehan; Alan C Evans; Kelly N Botteron
Journal:  J Am Acad Child Adolesc Psychiatry       Date:  2014-09-03       Impact factor: 8.829

6.  A depression rating scale for schizophrenics.

Authors:  D Addington; J Addington; B Schissel
Journal:  Schizophr Res       Date:  1990 Jul-Aug       Impact factor: 4.939

7.  Towards structured sharing of raw and derived neuroimaging data across existing resources.

Authors:  D B Keator; K Helmer; J Steffener; J A Turner; T G M Van Erp; S Gadde; N Ashish; G A Burns; B N Nichols
Journal:  Neuroimage       Date:  2013-05-30       Impact factor: 6.556

8.  Patterns of Gray Matter Abnormalities in Schizophrenia Based on an International Mega-analysis.

Authors:  Cota Navin Gupta; Vince D Calhoun; Srinivas Rachakonda; Jiayu Chen; Veena Patel; Jingyu Liu; Judith Segall; Barbara Franke; Marcel P Zwiers; Alejandro Arias-Vasquez; Jan Buitelaar; Simon E Fisher; Guillen Fernandez; Theo G M van Erp; Steven Potkin; Judith Ford; Daniel Mathalon; Sarah McEwen; Hyo Jong Lee; Bryon A Mueller; Douglas N Greve; Ole Andreassen; Ingrid Agartz; Randy L Gollub; Scott R Sponheim; Stefan Ehrlich; Lei Wang; Godfrey Pearlson; David C Glahn; Emma Sprooten; Andrew R Mayer; Julia Stephen; Rex E Jung; Jose Canive; Juan Bustillo; Jessica A Turner
Journal:  Schizophr Bull       Date:  2014-12-28       Impact factor: 9.306

9.  Automated real-time behavioral and physiological data acquisition and display integrated with stimulus presentation for FMRI.

Authors:  James T Voyvodic; Gary H Glover; Douglas Greve; Syam Gadde
Journal:  Front Neuroinform       Date:  2011-12-23       Impact factor: 4.081

10.  Subcortical brain volume abnormalities in 2028 individuals with schizophrenia and 2540 healthy controls via the ENIGMA consortium.

Authors:  T G M van Erp; D P Hibar; J M Rasmussen; D C Glahn; G D Pearlson; O A Andreassen; I Agartz; L T Westlye; U K Haukvik; A M Dale; I Melle; C B Hartberg; O Gruber; B Kraemer; D Zilles; G Donohoe; S Kelly; C McDonald; D W Morris; D M Cannon; A Corvin; M W J Machielsen; L Koenders; L de Haan; D J Veltman; T D Satterthwaite; D H Wolf; R C Gur; R E Gur; S G Potkin; D H Mathalon; B A Mueller; A Preda; F Macciardi; S Ehrlich; E Walton; J Hass; V D Calhoun; H J Bockholt; S R Sponheim; J M Shoemaker; N E M van Haren; H E H Pol; R A Ophoff; R S Kahn; R Roiz-Santiañez; B Crespo-Facorro; L Wang; K I Alpert; E G Jönsson; R Dimitrova; C Bois; H C Whalley; A M McIntosh; S M Lawrie; R Hashimoto; P M Thompson; J A Turner
Journal:  Mol Psychiatry       Date:  2015-08-18       Impact factor: 15.992

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  30 in total

1.  Disrupted network cross talk, hippocampal dysfunction and hallucinations in schizophrenia.

Authors:  Stephanie M Hare; Alicia S Law; Judith M Ford; Daniel H Mathalon; Aral Ahmadi; Eswar Damaraju; Juan Bustillo; Aysenil Belger; Hyo Jong Lee; Bryon A Mueller; Kelvin O Lim; Gregory G Brown; Adrian Preda; Theo G M van Erp; Steven G Potkin; Vince D Calhoun; Jessica A Turner
Journal:  Schizophr Res       Date:  2018-03-21       Impact factor: 4.939

2.  Path analysis: A method to estimate altered pathways in time-varying graphs of neuroimaging data.

Authors:  Haleh Falakshahi; Hooman Rokham; Zening Fu; Armin Iraji; Daniel H Mathalon; Judith M Ford; Bryon A Mueller; Adrian Preda; Theo G M van Erp; Jessica A Turner; Sergey Plis; Vince D Calhoun
Journal:  Netw Neurosci       Date:  2022-07-01

3.  Covarying structural alterations in laterality of the temporal lobe in schizophrenia: A case for source-based laterality.

Authors:  Thomas P DeRamus; Rogers F Silva; Armin Iraji; Eswar Damaraju; Aysenil Belger; Judith M Ford; Sarah C McEwen; Daniel H Mathalon; Bryon A Mueller; Godfrey D Pearlson; Steven G Potkin; Adrian Preda; Jessica A Turner; Jatin G Vaidya; Theo G M van Erp; Vince D Calhoun
Journal:  NMR Biomed       Date:  2020-03-23       Impact factor: 4.044

4.  Salience-Default Mode Functional Network Connectivity Linked to Positive and Negative Symptoms of Schizophrenia.

Authors:  Stephanie M Hare; Judith M Ford; Daniel H Mathalon; Eswar Damaraju; Juan Bustillo; Aysenil Belger; Hyo Jong Lee; Bryon A Mueller; Kelvin O Lim; Gregory G Brown; Adrian Preda; Theo G M van Erp; Steven G Potkin; Vince D Calhoun; Jessica A Turner
Journal:  Schizophr Bull       Date:  2019-06-18       Impact factor: 9.306

5.  Parallel group ICA+ICA: Joint estimation of linked functional network variability and structural covariation with application to schizophrenia.

Authors:  Shile Qi; Jing Sui; Jiayu Chen; Jingyu Liu; Rongtao Jiang; Rogers Silva; Armin Iraji; Eswar Damaraju; Mustafa Salman; Dongdong Lin; Zening Fu; Dongmei Zhi; Jessica A Turner; Juan Bustillo; Judith M Ford; Daniel H Mathalon; James Voyvodic; Sarah McEwen; Adrian Preda; Aysenil Belger; Steven G Potkin; Bryon A Mueller; Tulay Adali; Vince D Calhoun
Journal:  Hum Brain Mapp       Date:  2019-05-16       Impact factor: 5.038

6.  An Approach to Automatically Label and Order Brain Activity/Component Maps.

Authors:  Mustafa S Salman; Tor D Wager; Eswar Damaraju; Anees Abrol; Victor M Vergara; Zening Fu; Vince D Calhoun
Journal:  Brain Connect       Date:  2021-07-05

7.  N-BiC: A Method for Multi-Component and Symptom Biclustering of Structural MRI Data: Application to Schizophrenia.

Authors:  Md Abdur Rahaman; Jessica A Turner; Cota Navin Gupta; Srinivas Rachakonda; Jiayu Chen; Jingyu Liu; Theo G M van Erp; Steven Potkin; Judith Ford; Daniel Mathalon; Hyo Jong Lee; Wenhao Jiang; Bryon A Mueller; Ole Andreassen; Ingrid Agartz; Scott R Sponheim; Andrew R Mayer; Julia Stephen; Rex E Jung; Jose Canive; Juan Bustillo; Vince D Calhoun
Journal:  IEEE Trans Biomed Eng       Date:  2019-04-01       Impact factor: 4.538

8.  Tri-Clustering Dynamic Functional Network Connectivity Identifies Significant Schizophrenia Effects Across Multiple States in Distinct Subgroups of Individuals.

Authors:  Md Abdur Rahaman; Eswar Damaraju; Jessica A Turner; Theo G M van Erp; Daniel Mathalon; Jatin Vaidya; Bryon Muller; Godfrey Pearlson; Vince D Calhoun
Journal:  Brain Connect       Date:  2021-07-30

9.  Reading the (functional) writing on the (structural) wall: Multimodal fusion of brain structure and function via a deep neural network based translation approach reveals novel impairments in schizophrenia.

Authors:  Sergey M Plis; Md Faijul Amin; Adam Chekroud; Devon Hjelm; Eswar Damaraju; Hyo Jong Lee; Juan R Bustillo; KyungHyun Cho; Godfrey D Pearlson; Vince D Calhoun
Journal:  Neuroimage       Date:  2018-07-25       Impact factor: 6.556

10.  Meta-Modal Information Flow: A Method for Capturing Multimodal Modular Disconnectivity in Schizophrenia.

Authors:  Haleh Falakshahi; Victor M Vergara; Jingyu Liu; Daniel H Mathalon; Judith M Ford; James Voyvodic; Bryon A Mueller; Aysenil Belger; Sarah McEwen; Steven G Potkin; Adrian Preda; Hooman Rokham; Jing Sui; Jessica A Turner; Sergey Plis; Vince D Calhoun
Journal:  IEEE Trans Biomed Eng       Date:  2020-01-07       Impact factor: 4.538

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