Literature DB >> 26311464

Iminoboronate Formation Leads to Fast and Reversible Conjugation Chemistry of α-Nucleophiles at Neutral pH.

Anupam Bandyopadhyay1, Jianmin Gao2.   

Abstract

Bioorthogonal reactions that are fast and reversible under physiological conditions are in high demand for biological applications. Herein, it is shown that an ortho boronic acid substituent makes aryl ketones rapidly conjugate with α-nucleophiles at neutral pH. Specifically, 2-acetylphenylboronic acid and derivatives were found to conjugate with phenylhydrazine with rate constants of 10(2) to 10(3) M(-1) s(-1) , comparable to the fastest bioorthogonal conjugations known to date. (11) B NMR analysis revealed the varied extent of iminoboronate formation of the conjugates, in which the imine nitrogen forms a dative bond with boron. The iminoboronate formation activates the imines for hydrolysis and exchange, rendering these oxime/hydrazone conjugations reversible and dynamic under physiological conditions. The fast and dynamic nature of the iminoboronate chemistry should find wide applications in biology.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  dynamic combinatorial chemistry; hydrazone; iminoboronate; oxime; α-nucleophiles

Mesh:

Substances:

Year:  2015        PMID: 26311464      PMCID: PMC4699557          DOI: 10.1002/chem.201502077

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  27 in total

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Authors:  Thang K Chiu; Jan Kubelka; Regine Herbst-Irmer; William A Eaton; James Hofrichter; David R Davies
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-13       Impact factor: 11.205

Review 2.  Chemistry in living systems.

Authors:  Jennifer A Prescher; Carolyn R Bertozzi
Journal:  Nat Chem Biol       Date:  2005-06       Impact factor: 15.040

3.  Nucleophilic catalysis of oxime ligation.

Authors:  Anouk Dirksen; Tilman M Hackeng; Philip E Dawson
Journal:  Angew Chem Int Ed Engl       Date:  2006-11-20       Impact factor: 15.336

4.  Schiff base formation and recognition of amino sugars, aminoglycosides and biological polyamines by 2-formyl phenylboronic acid in aqueous solution.

Authors:  Nini J Gutiérrez-Moreno; Felipe Medrano; Anatoly K Yatsimirsky
Journal:  Org Biomol Chem       Date:  2012-07-27       Impact factor: 3.876

5.  Tetrazine-based cycloadditions: application to pretargeted live cell imaging.

Authors:  Neal K Devaraj; Ralph Weissleder; Scott A Hilderbrand
Journal:  Bioconjug Chem       Date:  2008-12       Impact factor: 4.774

6.  Importance of ortho proton donors in catalysis of hydrazone formation.

Authors:  Pete Crisalli; Eric T Kool
Journal:  Org Lett       Date:  2013-03-11       Impact factor: 6.005

7.  Optimizing the reversibility of hydrazone formation for dynamic combinatorial chemistry.

Authors:  Régis Nguyen; Ivan Huc
Journal:  Chem Commun (Camb)       Date:  2003-04-21       Impact factor: 6.222

8.  Dynamic mixtures and combinatorial libraries: imines as probes for molecular evolution at the interface between chemistry and biology.

Authors:  Andreas Herrmann
Journal:  Org Biomol Chem       Date:  2009-06-29       Impact factor: 3.876

9.  Addition of the keto functional group to the genetic code of Escherichia coli.

Authors:  Lei Wang; Zhiwen Zhang; Ansgar Brock; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-23       Impact factor: 11.205

10.  Fast hydrazone reactants: electronic and acid/base effects strongly influence rate at biological pH.

Authors:  Eric T Kool; Do-Hyoung Park; Pete Crisalli
Journal:  J Am Chem Soc       Date:  2013-11-13       Impact factor: 15.419

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  19 in total

1.  Borylated oximes: versatile building blocks for organic synthesis.

Authors:  Sean K Liew; Aleksandra Holownia; Diego B Diaz; Philip A Cistrone; Philip E Dawson; Andrei K Yudin
Journal:  Chem Commun (Camb)       Date:  2017-09-29       Impact factor: 6.222

Review 2.  Oximes and Hydrazones in Bioconjugation: Mechanism and Catalysis.

Authors:  Dominik K Kölmel; Eric T Kool
Journal:  Chem Rev       Date:  2017-06-22       Impact factor: 60.622

3.  β-Hydroxy-Stabilized Boron-Nitrogen Heterocycles Enable Rapid and Efficient C-Terminal Protein Modification.

Authors:  Han Gu; Saptarshi Ghosh; Richard J Staples; Susan L Bane
Journal:  Bioconjug Chem       Date:  2019-09-18       Impact factor: 4.774

4.  Intramolecular Catalysis of Hydrazone Formation of Aryl-Aldehydes via ortho-Phosphate Proton Exchange.

Authors:  Ozlem Dile; Anthony M Sorrentino; Susan Bane
Journal:  Synlett       Date:  2016-02-17       Impact factor: 2.454

5.  Biocompatible conjugation of Tris base to 2-acetyl and 2-formyl phenylboronic acid.

Authors:  Kaicheng Li; Michael A Kelly; Jianmin Gao
Journal:  Org Biomol Chem       Date:  2019-05-30       Impact factor: 3.876

Review 6.  Targeting biomolecules with reversible covalent chemistry.

Authors:  Anupam Bandyopadhyay; Jianmin Gao
Journal:  Curr Opin Chem Biol       Date:  2016-09-10       Impact factor: 8.822

7.  Iminoboronate-Based Peptide Cyclization That Responds to pH, Oxidation, and Small Molecule Modulators.

Authors:  Anupam Bandyopadhyay; Jianmin Gao
Journal:  J Am Chem Soc       Date:  2016-02-12       Impact factor: 15.419

8.  Versatile Bioconjugation Chemistries of ortho-Boronyl Aryl Ketones and Aldehydes.

Authors:  Samantha Cambray; Jianmin Gao
Journal:  Acc Chem Res       Date:  2018-08-15       Impact factor: 22.384

9.  Fast Diazaborine Formation of Semicarbazide Enables Facile Labeling of Bacterial Pathogens.

Authors:  Anupam Bandyopadhyay; Samantha Cambray; Jianmin Gao
Journal:  J Am Chem Soc       Date:  2017-01-03       Impact factor: 15.419

10.  Formation of hydrazones and stabilized boron-nitrogen heterocycles in aqueous solution from carbohydrazides and ortho-formylphenylboronic acids.

Authors:  Han Gu; Tak Ian Chio; Zhen Lei; Richard J Staples; Jennifer S Hirschi; Susan Bane
Journal:  Org Biomol Chem       Date:  2017-09-20       Impact factor: 3.876

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