Literature DB >> 27599186

Targeting biomolecules with reversible covalent chemistry.

Anupam Bandyopadhyay1, Jianmin Gao2.   

Abstract

Interaction of biomolecules typically proceeds in a highly selective and reversible manner, for which covalent bond formation has been largely avoided due to the potential difficulty of dissociation. However, employing reversible covalent warheads in drug design has given rise to covalent enzyme inhibitors that serve as powerful therapeutics, as well as molecular probes with exquisite target selectivity. This review article summarizes the recent advances in the development of reversible covalent chemistry for biological and medicinal applications. Specifically, we document the chemical strategies that allow for reversible modification of the three major classes of nucleophiles in biology: thiols, alcohols and amines. Emphasis is given to the chemical mechanisms that underlie the development of these reversible covalent reactions and their utilization in biology.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27599186      PMCID: PMC5107367          DOI: 10.1016/j.cbpa.2016.08.011

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  34 in total

Review 1.  The pharmacological landscape and therapeutic potential of serine hydrolases.

Authors:  Daniel A Bachovchin; Benjamin F Cravatt
Journal:  Nat Rev Drug Discov       Date:  2012-01-03       Impact factor: 84.694

Review 2.  Idiosyncratic drug reactions: past, present, and future.

Authors:  Jack Uetrecht
Journal:  Chem Res Toxicol       Date:  2007-12-04       Impact factor: 3.739

3.  A highly selective fluorescent sensor for glucosamine.

Authors:  Tam Minh Tran; Yuksel Alan; Timothy Edward Glass
Journal:  Chem Commun (Camb)       Date:  2015-05-07       Impact factor: 6.222

Review 4.  Diverse functional roles of reactive cysteines.

Authors:  Nicholas J Pace; Eranthie Weerapana
Journal:  ACS Chem Biol       Date:  2012-11-29       Impact factor: 5.100

5.  Schiff base formation and recognition of amino sugars, aminoglycosides and biological polyamines by 2-formyl phenylboronic acid in aqueous solution.

Authors:  Nini J Gutiérrez-Moreno; Felipe Medrano; Anatoly K Yatsimirsky
Journal:  Org Biomol Chem       Date:  2012-07-27       Impact factor: 3.876

6.  "Development of the proteasome inhibitor Velcade (Bortezomib)" by Julian Adams, Ph.D., and Michael Kauffman, M.D., Ph.D.

Authors:  Richard Bold
Journal:  Cancer Invest       Date:  2004       Impact factor: 2.176

7.  Selective amine recognition: development of a chemosensor for dopamine and norepinephrine.

Authors:  Kristen E Secor; Timothy E Glass
Journal:  Org Lett       Date:  2004-10-14       Impact factor: 6.005

8.  Development of a fluorescent chemosensor for the detection of kynurenine.

Authors:  Jessica L Klockow; Timothy E Glass
Journal:  Org Lett       Date:  2012-12-24       Impact factor: 6.005

9.  Design of reversible, cysteine-targeted Michael acceptors guided by kinetic and computational analysis.

Authors:  Shyam Krishnan; Rand M Miller; Boxue Tian; R Dyche Mullins; Matthew P Jacobson; Jack Taunton
Journal:  J Am Chem Soc       Date:  2014-09-02       Impact factor: 15.419

10.  Covalent docking of large libraries for the discovery of chemical probes.

Authors:  Nir London; Rand M Miller; Shyam Krishnan; Kenji Uchida; John J Irwin; Oliv Eidam; Lucie Gibold; Peter Cimermančič; Richard Bonnet; Brian K Shoichet; Jack Taunton
Journal:  Nat Chem Biol       Date:  2014-10-26       Impact factor: 15.040

View more
  25 in total

1.  The Proteome-Wide Potential for Reversible Covalency at Cysteine.

Authors:  Kristine Senkane; Ekaterina V Vinogradova; Radu M Suciu; Vincent M Crowley; Balyn W Zaro; J Michael Bradshaw; Ken A Brameld; Benjamin F Cravatt
Journal:  Angew Chem Int Ed Engl       Date:  2019-07-05       Impact factor: 15.336

2.  Ranking Reversible Covalent Drugs: From Free Energy Perturbation to Fragment Docking.

Authors:  Han Zhang; Wenjuan Jiang; Payal Chatterjee; Yun Luo
Journal:  J Chem Inf Model       Date:  2019-02-27       Impact factor: 4.956

3.  Expanding the Scope of Electrophiles Capable of Targeting K-Ras Oncogenes.

Authors:  Lynn M McGregor; Meredith L Jenkins; Caitlin Kerwin; John E Burke; Kevan M Shokat
Journal:  Biochemistry       Date:  2017-06-16       Impact factor: 3.162

Review 4.  The Taxonomy of Covalent Inhibitors.

Authors:  Alfred Tuley; Walter Fast
Journal:  Biochemistry       Date:  2018-04-30       Impact factor: 3.162

Review 5.  Recent Advances in Selective and Irreversible Covalent Ligand Development and Validation.

Authors:  Tinghu Zhang; John M Hatcher; Mingxing Teng; Nathanael S Gray; Milka Kostic
Journal:  Cell Chem Biol       Date:  2019-10-17       Impact factor: 8.116

6.  Versatile Bioconjugation Chemistries of ortho-Boronyl Aryl Ketones and Aldehydes.

Authors:  Samantha Cambray; Jianmin Gao
Journal:  Acc Chem Res       Date:  2018-08-15       Impact factor: 22.384

7.  Pyrocinchonimides Conjugate to Amine Groups on Proteins via Imide Transfer.

Authors:  Mark B Richardson; Kristin N Gabriel; Joseph A Garcia; Shareen N Ashby; Rebekah P Dyer; Joshua K Kim; Calvin J Lau; John Hong; Ryan J Le Tourneau; Sanjana Sen; David L Narel; Benjamin B Katz; Joseph W Ziller; Sudipta Majumdar; Philip G Collins; Gregory A Weiss
Journal:  Bioconjug Chem       Date:  2020-04-30       Impact factor: 4.774

8.  Peptide Probes of Colistin Resistance Discovered via Chemically Enhanced Phage Display.

Authors:  Michael Kelly; Samantha Cambray; Kelly A McCarthy; Wenjian Wang; Edward Geisinger; Juan Ortiz-Marquez; Tim van Opijnen; Jianmin Gao
Journal:  ACS Infect Dis       Date:  2020-08-19       Impact factor: 5.084

Review 9.  Recent advances in the development of covalent inhibitors.

Authors:  Hyunsoo Kim; Yoon Soo Hwang; Mingi Kim; Seung Bum Park
Journal:  RSC Med Chem       Date:  2021-05-04

10.  Norstictic Acid Is a Selective Allosteric Transcriptional Regulator.

Authors:  Julie M Garlick; Steven M Sturlis; Paul A Bruno; Joel A Yates; Amanda L Peiffer; Yejun Liu; Laura Goo; LiWei Bao; Samantha N De Salle; Giselle Tamayo-Castillo; Charles L Brooks; Sofia D Merajver; Anna K Mapp
Journal:  J Am Chem Soc       Date:  2021-06-17       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.