Literature DB >> 28640998

Oximes and Hydrazones in Bioconjugation: Mechanism and Catalysis.

Dominik K Kölmel1, Eric T Kool1.   

Abstract

The formation of oximes and hydrazones is employed in numerous scientific fields as a simple and versatile conjugation strategy. This imine-forming reaction is applied in fields as diverse as polymer chemistry, biomaterials and hydrogels, dynamic combinatorial chemistry, organic synthesis, and chemical biology. Here we outline chemical developments in this field, with special focus on the past ∼10 years of developments. Recent strategies for installing reactive carbonyl groups and α-nucleophiles into biomolecules are described. The basic chemical properties of reactants and products in this reaction are then reviewed, with an eye to understanding the reaction's mechanism and how reactant structure controls rates and equilibria in the process. Recent work that has uncovered structural features and new mechanisms for speeding the reaction, sometimes by orders of magnitude, is discussed. We describe recent studies that have identified especially fast reacting aldehyde/ketone substrates and structural effects that lead to rapid-reacting α-nucleophiles as well. Among the most effective new strategies has been the development of substituents near the reactive aldehyde group that either transfer protons at the transition state or trap the initially formed tetrahedral intermediates. In addition, the recent development of efficient nucleophilic catalysts for the reaction is outlined, improving greatly upon aniline, the classical catalyst for imine formation. A number of uses of such second- and third-generation catalysts in bioconjugation and in cellular applications are highlighted. While formation of hydrazone and oxime has been traditionally regarded as being limited by slow rates, developments in the past 5 years have resulted in completely overturning this limitation; indeed, the reaction is now one of the fastest and most versatile reactions available for conjugations of biomolecules and biomaterials.

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Year:  2017        PMID: 28640998      PMCID: PMC5580355          DOI: 10.1021/acs.chemrev.7b00090

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  131 in total

1.  Capture of peptides with N-terminal serine and threonine: a sequence-specific chemical method for Peptide mixture simplification.

Authors:  Dirk Chelius; Thomas A Shaler
Journal:  Bioconjug Chem       Date:  2003 Jan-Feb       Impact factor: 4.774

2.  Hydrazone- and hydrazide-containing N-substituted glycines as peptoid surrogates for expedited library synthesis: application to the preparation of Tsg101-directed HIV-1 budding antagonists.

Authors:  Fa Liu; Andrew G Stephen; Catherine S Adamson; Karine Gousset; M Javad Aman; Eric O Freed; Robert J Fisher; Terrence R Burke
Journal:  Org Lett       Date:  2006-10-26       Impact factor: 6.005

3.  Nucleophilic catalysis of oxime ligation.

Authors:  Anouk Dirksen; Tilman M Hackeng; Philip E Dawson
Journal:  Angew Chem Int Ed Engl       Date:  2006-11-20       Impact factor: 15.336

4.  Insights into the mechanism and catalysis of oxime coupling chemistry at physiological pH.

Authors:  Shujiang Wang; Deepanjali Gurav; Oommen P Oommen; Oommen P Varghese
Journal:  Chemistry       Date:  2015-03-03       Impact factor: 5.236

5.  4-ketoproline: An electrophilic proline analog for bioconjugation.

Authors:  Amit Choudhary; Kimberli J Kamer; Matthew D Shoulders; Ronald T Raines
Journal:  Biopolymers       Date:  2015-03       Impact factor: 2.505

6.  A highly efficient catalyst for oxime ligation and hydrazone-oxime exchange suitable for bioconjugation.

Authors:  Mohammad Rashidian; Mohammad M Mahmoodi; Rachit Shah; Jonathan K Dozier; Carston R Wagner; Mark D Distefano
Journal:  Bioconjug Chem       Date:  2013-03-06       Impact factor: 4.774

7.  Development of potent monoclonal antibody auristatin conjugates for cancer therapy.

Authors:  Svetlana O Doronina; Brian E Toki; Michael Y Torgov; Brian A Mendelsohn; Charles G Cerveny; Dana F Chace; Ron L DeBlanc; R Patrick Gearing; Tim D Bovee; Clay B Siegall; Joseph A Francisco; Alan F Wahl; Damon L Meyer; Peter D Senter
Journal:  Nat Biotechnol       Date:  2003-06-01       Impact factor: 54.908

Review 8.  Oxime ligation: a chemoselective click-type reaction for accessing multifunctional biomolecular constructs.

Authors:  Sébastien Ulrich; Didier Boturyn; Alberto Marra; Olivier Renaudet; Pascal Dumy
Journal:  Chemistry       Date:  2013-12-02       Impact factor: 5.236

9.  Rapid catalyst-free hydrazone ligation: protein-pyridoxal phosphoramides.

Authors:  Xiaojian Wang; James W Canary
Journal:  Bioconjug Chem       Date:  2012-12-03       Impact factor: 4.774

10.  Development of a hypersensitive periodate-cleavable amino acid that is methionine- and disulfide-compatible and its application in MHC exchange reagents for T cell characterisation.

Authors:  Alessia Amore; Kim Wals; Evelyn Koekoek; Rieuwert Hoppes; Mireille Toebes; Ton N M Schumacher; Boris Rodenko; Huib Ovaa
Journal:  Chembiochem       Date:  2013-01-02       Impact factor: 3.164

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  89 in total

1.  Borylated oximes: versatile building blocks for organic synthesis.

Authors:  Sean K Liew; Aleksandra Holownia; Diego B Diaz; Philip A Cistrone; Philip E Dawson; Andrei K Yudin
Journal:  Chem Commun (Camb)       Date:  2017-09-29       Impact factor: 6.222

Review 2.  Achieving Controlled Biomolecule-Biomaterial Conjugation.

Authors:  Christopher D Spicer; E Thomas Pashuck; Molly M Stevens
Journal:  Chem Rev       Date:  2018-07-24       Impact factor: 60.622

Review 3.  Nucleic Acid-Barcoding Technologies: Converting DNA Sequencing into a Broad-Spectrum Molecular Counter.

Authors:  Glen Liszczak; Tom W Muir
Journal:  Angew Chem Int Ed Engl       Date:  2019-02-06       Impact factor: 15.336

4.  Development of a microcolumn one-site immunometric assay for a protein biomarker: Analysis of alpha1-acid glycoprotein.

Authors:  Chenhua Zhang; Shae Lott; William Clarke; David S Hage
Journal:  J Chromatogr A       Date:  2019-09-20       Impact factor: 4.759

5.  Ultrafast Oxime Formation Enables Efficient Fluorescence Light-up Measurement of DNA Base Excision.

Authors:  David L Wilson; Eric T Kool
Journal:  J Am Chem Soc       Date:  2019-11-27       Impact factor: 15.419

6.  Synthesis and biological evaluation of structurally diverse α-conformationally restricted chalcones and related analogues.

Authors:  Casey J Maguire; Graham J Carlson; Jacob W Ford; Tracy E Strecker; Ernest Hamel; Mary Lynn Trawick; Kevin G Pinney
Journal:  Medchemcomm       Date:  2019-06-04       Impact factor: 3.597

7.  A high-throughput SAMDI-mass spectrometry assay for isocitrate dehydrogenase 1.

Authors:  Sarah E Anderson; Natalie S Fahey; Jungsoo Park; Patrick T O'Kane; Chad A Mirkin; Milan Mrksich
Journal:  Analyst       Date:  2020-04-16       Impact factor: 4.616

8.  Constructing New Bioorthogonal Reagents and Reactions.

Authors:  R David Row; Jennifer A Prescher
Journal:  Acc Chem Res       Date:  2018-05-04       Impact factor: 22.384

9.  Quantitation of Apurinic/Apyrimidinic Sites in Isolated DNA and in Mammalian Tissue with a Reduced Level of Artifacts.

Authors:  Haoqing Chen; Lihua Yao; Christina Brown; Carmelo J Rizzo; Robert J Turesky
Journal:  Anal Chem       Date:  2019-05-13       Impact factor: 6.986

10.  Leveraging the Knorr Pyrazole Synthesis for the Facile Generation of Thioester Surrogates for use in Native Chemical Ligation.

Authors:  Dillon T Flood; Jordi C J Hintzen; Michael J Bird; Philip A Cistrone; Jason S Chen; Philip E Dawson
Journal:  Angew Chem Int Ed Engl       Date:  2018-08-10       Impact factor: 15.336

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