| Literature DB >> 26308216 |
Peiliang Geng1, Jianjun Li1, Ning Wang1, Juanjuan Ou1, Ganfeng Xie1, Chen Liu1, Xiaoxin Zhao1, Lisha Xiang1, Yunmei Liao1, Houjie Liang1.
Abstract
BACKGROUND: Published data on the association between PSCA rs2294008 polymorphism and cancer risk have implicated inconclusive results. To determine the relationship and to precisely assess the effect size estimate of the association, we performed a meta-analysis.Entities:
Mesh:
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Year: 2015 PMID: 26308216 PMCID: PMC4550426 DOI: 10.1371/journal.pone.0136269
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Flow diagram of the study selection process.
Main characteristics of all studies included in the meta-analysis.
PCR-RFLP: polymerase chain reaction-restriction fragment length polymorphism; PCR-LDR: PCR-ligation detection reaction; DHPLC: denaturing high performance liquid chromatography; AS-PCR: allele-specific PCR; SNP: single nucleotide polymorphism, PB: population-based studies; HB: hospital-based studies.
| Study | Year | Area | Ethnicity | Genotyping method | Cancer type | Control source | No. of cases | No. of controls |
|---|---|---|---|---|---|---|---|---|
| Sakamoto et al. | 2008 | Japan | Asian | TaqMan, SNP array | Gastric cancer | PB | 1524 | 1396 |
| Sakamoto et al. | 2008 | Korea | Asian | TaqMan, SNP array | Gastric cancer | PB | 871 | 390 |
| Matsuo et al. | 2009 | Japan | Asian | TaqMan | Gastric cancer | HB | 708 | 708 |
| Wu et al. | 2010 | China | Asian | PCR-RFLP | Gastric cancer | HB | 1710 | 995 |
| Ou et al. | 2010 | China | Asian | PCR-LDR | Gastric cancer | HB | 196 | 246 |
| Lu et al. | 2011 | China | Asian | PCR-RFLP | Gastric cancer | PB | 1023 | 1069 |
| Song et al. | 2011 | Korea | Asian | PCR-RFLP | Gastric cancer | HB | 3245 | 1700 |
| Zeng et al. | 2011 | China | Asian | PCR-RFLP | Gastric cancer | HB | 460 | 549 |
| Lochhead et al. | 2011 | Polish | Caucasian | TaqMan | Gastric cancer | PB | 292 | 382 |
| Lochhead et al. | 2011 | USA | Caucasian | TaqMan | Gastric cancer | PB | 308 | 208 |
| Sala et al. | 2011 | Spain | Caucasian | SNP array | Gastric cancer | PB | 409 | 1515 |
| Zhao et al. | 2012 | China | Asian | DHPLC | Gastric cancer | PB | 185 | 200 |
| Li et al. | 2012 | China | Asian | iPLEX | Gastric cancer | HB | 300 | 300 |
| Tanikawa et al. | 2012 | Japan | Asian | SNP array | Gastric cancer | HB | 2300 | 16567 |
| Rizzato et al. | 2013 | Venezuela | Caucasian | AS-PCR | Gastric cancer | HB | 178 | 1057 |
| Wu et al. | 2009 | USA | Caucasian | SNP array | Bladder cancer | PB | 5038 | 9363 |
| Wang et al. | 2010 | China | Asian | PCR-RFLP | Bladder cancer | HB | 581 | 580 |
| Fu et al. | 2012 | Spain | Caucasian | SNP array | Bladder cancer | PB | 5393 | 7324 |
| Ma et al. | 2013 | China | Asian | iPLEX | Bladder cancer | PB | 175 | 962 |
| Wang et al. | 2013 | China | Asian | TaqMan | Bladder cancer | PB | 1210 | 1008 |
| Lochhead et al. | 2011 | USA | Caucasian | TaqMan | Esophageal cancer | PB | 158 | 208 |
| Rai er al. | 2013 | India | Asian | TaqMan | Gallbladder carcinoma | PB | 405 | 247 |
| Kim et al. | 2012 | Korea | Asian | AS-PCR | Breast cancer | HB | 451 | 459 |
| Smith et al. | 2012 | UK | Caucasian | TaqMan | Colorectal cancer | PB | 77 | 804 |
Fig 2Forest plot of cancer susceptibility associated with PSCA rs2294008 polymorphism under TT vs CC stratified according to cancer type.
For each study, the estimates of OR and its 95% CI were plotted with a box and a horizontal line. The symbol filled diamond indicates pooled OR and its 95% CI. Random effects meta-analysis shows a significant association.
Fig 3Forest plot of cancer susceptibility associated with PSCA rs2294008 polymorphism under TT + CT vs CC stratified according to cancer type.
For each study, the estimates of OR and its 95% CI were plotted with a box and a horizontal line. The symbol filled diamond indicates pooled OR and its 95% CI. Fixed effects meta-analysis shows a significant association.
Results of meta-analysis for PSCA rs2294008 C>T polymorphism and cancer.
P, p value of Q test for heterogeneity.
| Study group | No. of studies | TT vs CC | TT + CT vs CC | TT vs CT + CC | T vs C | CT vs CC | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) | P | OR (95% CI) | P | OR (95% CI) | P | OR (95% CI) | P | OR (95% CI) | P | ||
| Total | 24 | 1.18 (1.10, 1.27) | 0.007 | 1.08 (1.05, 1.10) | 0.506 | 1.14 (1.07, 1.21) | 0.029 | 1.10 (1.06, 1.14) | 0.007 | 1.10 (1.06, 1.13) | 0.497 |
| Cancer type | |||||||||||
| Gastric cancer | 15 | 1.21 (1.08, 1.36) | 0.001 | 1.09 (1.05, 1.13) | 0.384 | 1.17 (1.06, 1.29) | 0.004 | 1.12 (1.07, 1.18) | 0.004 | 1.12 (1.08, 1.18) | 0.536 |
| Bladder cancer | 5 | 1.16 (1.09, 1.23) | 0.723 | 1.07 (1.03, 1.11) | 0.628 | 1.10 (1.04, 1.17) | 0.699 | 1.08 (1.05, 1.11) | 0.481 | 1.08 (1.04, 1.13) | 0.673 |
| Others | 4 | 0.99 (0.80, 1.24) | 0.574 | 0.99 (0.86, 1.12) | 0.511 | 1.04 (0.85, 1.27) | 0.909 | 1.00 (0.90, 1.11) | 0.475 | 0.97 (0.84, 1.13) | 0.351 |
| Ethnicity | |||||||||||
| Asian | 16 | 1.18 (1.06, 1.32) | 0.003 | 1.09 (1.06, 1.13) | 0.397 | 1.12 (1.02, 1.23) | 0.013 | 1.11 (1.06, 1.17) | 0.006 | 1.13 (1.08, 1.17) | 0.609 |
| Caucasian | 8 | 1.17 (1.08, 1.26) | 0.309 | 1.06 (1.02, 1.10) | 0.655 | 1.13 (1.06, 1.20) | 0.367 | 1.08 (1.03, 1.12) | 0.245 | 1.07 (1.03, 1.11) | 0.473 |
Fig 4Funnel plots of PSCA rs2294008 polymorphism and cancer risk (Begg: P = 0.442; Egger: P = 0.316; model: TT + CT vs CC).
Each point represents an individual study for the indicated association.