Literature DB >> 26302298

Crystal structure of the dynamin tetramer.

Thomas F Reubold1, Katja Faelber2, Nuria Plattner3, York Posor4, Katharina Ketel4, Ute Curth1,5, Jeanette Schlegel2, Roopsee Anand1, Dietmar J Manstein1,5, Frank Noé3, Volker Haucke4,6, Oliver Daumke2,6, Susanne Eschenburg1.   

Abstract

The mechanochemical protein dynamin is the prototype of the dynamin superfamily of large GTPases, which shape and remodel membranes in diverse cellular processes. Dynamin forms predominantly tetramers in the cytosol, which oligomerize at the neck of clathrin-coated vesicles to mediate constriction and subsequent scission of the membrane. Previous studies have described the architecture of dynamin dimers, but the molecular determinants for dynamin assembly and its regulation have remained unclear. Here we present the crystal structure of the human dynamin tetramer in the nucleotide-free state. Combining structural data with mutational studies, oligomerization measurements and Markov state models of molecular dynamics simulations, we suggest a mechanism by which oligomerization of dynamin is linked to the release of intramolecular autoinhibitory interactions. We elucidate how mutations that interfere with tetramer formation and autoinhibition can lead to the congenital muscle disorders Charcot-Marie-Tooth neuropathy and centronuclear myopathy, respectively. Notably, the bent shape of the tetramer explains how dynamin assembles into a right-handed helical oligomer of defined diameter, which has direct implications for its function in membrane constriction.

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Year:  2015        PMID: 26302298     DOI: 10.1038/nature14880

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  44 in total

1.  Dynamin-dependent and dynamin-independent processes contribute to the regulation of single vesicle release kinetics and quantal size.

Authors:  Margaret E Graham; Dermott W O'Callaghan; Harvey T McMahon; Robert D Burgoyne
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-07       Impact factor: 11.205

Review 2.  Structural insights into dynamin-mediated membrane fission.

Authors:  Katja Faelber; Martin Held; Song Gao; York Posor; Volker Haucke; Frank Noé; Oliver Daumke
Journal:  Structure       Date:  2012-10-10       Impact factor: 5.006

3.  The crystal structure of dynamin.

Authors:  Marijn G J Ford; Simon Jenni; Jodi Nunnari
Journal:  Nature       Date:  2011-09-18       Impact factor: 49.962

4.  Dynamin 2 mutations in Charcot-Marie-Tooth neuropathy highlight the importance of clathrin-mediated endocytosis in myelination.

Authors:  Páris N M Sidiropoulos; Michaela Miehe; Thomas Bock; Elisa Tinelli; Carole I Oertli; Rohini Kuner; Dies Meijer; Bernd Wollscheid; Axel Niemann; Ueli Suter
Journal:  Brain       Date:  2012-03-26       Impact factor: 13.501

5.  Importance of the pleckstrin homology domain of dynamin in clathrin-mediated endocytosis.

Authors:  Y Vallis; P Wigge; B Marks; P R Evans; H T McMahon
Journal:  Curr Biol       Date:  1999-03-11       Impact factor: 10.834

6.  Dynamin self-assembles into rings suggesting a mechanism for coated vesicle budding.

Authors:  J E Hinshaw; S L Schmid
Journal:  Nature       Date:  1995-03-09       Impact factor: 49.962

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  A dynamin mutant defines a superconstricted prefission state.

Authors:  Anna C Sundborger; Shunming Fang; Jürgen A Heymann; Pampa Ray; Joshua S Chappie; Jenny E Hinshaw
Journal:  Cell Rep       Date:  2014-07-31       Impact factor: 9.423

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  54 in total

1.  Identification and function of conformational dynamics in the multidomain GTPase dynamin.

Authors:  Saipraveen Srinivasan; Venkatasubramanian Dharmarajan; Dana Kim Reed; Patrick R Griffin; Sandra L Schmid
Journal:  EMBO J       Date:  2016-01-18       Impact factor: 11.598

2.  Isolation and Analysis of Mitochondrial Fission Enzyme DNM1 from Saccharomyces cerevisiae.

Authors:  Nolan W Kennedy; Lora K Picton; R Blake Hill
Journal:  Methods Mol Biol       Date:  2020

3.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

Review 4.  Function and regulation of the divisome for mitochondrial fission.

Authors:  Felix Kraus; Krishnendu Roy; Thomas J Pucadyil; Michael T Ryan
Journal:  Nature       Date:  2021-02-03       Impact factor: 49.962

5.  Dynamic remodeling of the dynamin helix during membrane constriction.

Authors:  Adai Colom; Lorena Redondo-Morata; Nicolas Chiaruttini; Aurélien Roux; Simon Scheuring
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-08       Impact factor: 11.205

6.  Structural insights into the activation mechanism of dynamin-like EHD ATPases.

Authors:  Arthur Alves Melo; Balachandra G Hegde; Claudio Shah; Elin Larsson; J Mario Isas; Séverine Kunz; Richard Lundmark; Ralf Langen; Oliver Daumke
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-22       Impact factor: 11.205

Review 7.  Mitochondrial dynamics: The dynamin superfamily and execution by collusion.

Authors:  Rajesh Ramachandran
Journal:  Semin Cell Dev Biol       Date:  2017-07-25       Impact factor: 7.727

Review 8.  The structural biology of the dynamin-related proteins: New insights into a diverse, multitalented family.

Authors:  Marijn G J Ford; Joshua S Chappie
Journal:  Traffic       Date:  2019-08-26       Impact factor: 6.215

9.  Multiensemble Markov models of molecular thermodynamics and kinetics.

Authors:  Hao Wu; Fabian Paul; Christoph Wehmeyer; Frank Noé
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-25       Impact factor: 11.205

10.  Distinct Splice Variants of Dynamin-related Protein 1 Differentially Utilize Mitochondrial Fission Factor as an Effector of Cooperative GTPase Activity.

Authors:  Patrick J Macdonald; Christopher A Francy; Natalia Stepanyants; Lance Lehman; Anthony Baglio; Jason A Mears; Xin Qi; Rajesh Ramachandran
Journal:  J Biol Chem       Date:  2015-11-17       Impact factor: 5.157

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