Literature DB >> 26783363

Identification and function of conformational dynamics in the multidomain GTPase dynamin.

Saipraveen Srinivasan1, Venkatasubramanian Dharmarajan2, Dana Kim Reed1, Patrick R Griffin2, Sandra L Schmid3.   

Abstract

Vesicle release upon endocytosis requires membrane fission, catalyzed by the large GTPase dynamin. Dynamin contains five domains that together orchestrate its mechanochemical activity. Hydrogen-deuterium exchange coupled with mass spectrometry revealed global nucleotide- and membrane-binding-dependent conformational changes, as well as the existence of an allosteric relay element in the α2(S) helix of the dynamin stalk domain. As predicted from structural studies, FRET analyses detect large movements of the pleckstrin homology domain (PHD) from a 'closed' conformation docked near the stalk to an 'open' conformation able to interact with membranes. We engineered dynamin constructs locked in either the closed or open state by chemical cross-linking or deletion mutagenesis and showed that PHD movements function as a conformational switch to regulate dynamin self-assembly, membrane binding, and fission. This PHD conformational switch is impaired by a centronuclear myopathy-causing disease mutation, S619L, highlighting the physiological significance of its role in regulating dynamin function. Together, these data provide new insight into coordinated conformational changes that regulate dynamin function and couple membrane binding, oligomerization, and GTPase activity during dynamin-catalyzed membrane fission.
© 2016 The Authors.

Entities:  

Keywords:  centronuclear myopathy; clathrin‐mediated endocytosis; hydrogen–deuterium exchange; membrane fission; pleckstrin homology domain

Mesh:

Substances:

Year:  2016        PMID: 26783363      PMCID: PMC4755114          DOI: 10.15252/embj.201593477

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  46 in total

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Authors:  Leonid V Chernomordik; Michael M Kozlov
Journal:  Annu Rev Biochem       Date:  2003       Impact factor: 23.643

2.  Probing protein ligand interactions by automated hydrogen/deuterium exchange mass spectrometry.

Authors:  Michael J Chalmers; Scott A Busby; Bruce D Pascal; Yuanjun He; Christopher L Hendrickson; Alan G Marshall; Patrick R Griffin
Journal:  Anal Chem       Date:  2006-02-15       Impact factor: 6.986

3.  An intramolecular signaling element that modulates dynamin function in vitro and in vivo.

Authors:  Joshua S Chappie; Sharmistha Acharya; Ya-Wen Liu; Marilyn Leonard; Thomas J Pucadyil; Sandra L Schmid
Journal:  Mol Biol Cell       Date:  2009-06-10       Impact factor: 4.138

4.  Crosstalk between Akt/GSK3β signaling and dynamin-1 regulates clathrin-mediated endocytosis.

Authors:  Carlos R Reis; Ping-Hung Chen; Saipraveen Srinivasan; François Aguet; Marcel Mettlen; Sandra L Schmid
Journal:  EMBO J       Date:  2015-07-02       Impact factor: 11.598

Review 5.  Dynamin, a membrane-remodelling GTPase.

Authors:  Shawn M Ferguson; Pietro De Camilli
Journal:  Nat Rev Mol Cell Biol       Date:  2012-01-11       Impact factor: 94.444

Review 6.  Differential hydrogen/deuterium exchange mass spectrometry analysis of protein-ligand interactions.

Authors:  Michael J Chalmers; Scott A Busby; Bruce D Pascal; Graham M West; Patrick R Griffin
Journal:  Expert Rev Proteomics       Date:  2011-02       Impact factor: 3.940

Review 7.  Pleckstrin homology (PH) domains and phosphoinositides.

Authors:  Mark A Lemmon
Journal:  Biochem Soc Symp       Date:  2007

8.  A dynamin mutant defines a superconstricted prefission state.

Authors:  Anna C Sundborger; Shunming Fang; Jürgen A Heymann; Pampa Ray; Joshua S Chappie; Jenny E Hinshaw
Journal:  Cell Rep       Date:  2014-07-31       Impact factor: 9.423

9.  Advances in analysis of low signal-to-noise images link dynamin and AP2 to the functions of an endocytic checkpoint.

Authors:  François Aguet; Costin N Antonescu; Marcel Mettlen; Sandra L Schmid; Gaudenz Danuser
Journal:  Dev Cell       Date:  2013-07-25       Impact factor: 12.270

Review 10.  Mechanics of dynamin-mediated membrane fission.

Authors:  Sandrine Morlot; Aurélien Roux
Journal:  Annu Rev Biophys       Date:  2013       Impact factor: 12.981

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  19 in total

1.  Identification and function of conformational dynamics in the multidomain GTPase dynamin.

Authors:  Saipraveen Srinivasan; Venkatasubramanian Dharmarajan; Dana Kim Reed; Patrick R Griffin; Sandra L Schmid
Journal:  EMBO J       Date:  2016-01-18       Impact factor: 11.598

Review 2.  Mitochondrial dynamics: The dynamin superfamily and execution by collusion.

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Journal:  Semin Cell Dev Biol       Date:  2017-07-25       Impact factor: 7.727

Review 3.  Regulation of Clathrin-Mediated Endocytosis.

Authors:  Marcel Mettlen; Ping-Hung Chen; Saipraveen Srinivasan; Gaudenz Danuser; Sandra L Schmid
Journal:  Annu Rev Biochem       Date:  2018-04-16       Impact factor: 23.643

4.  Crosstalk between CLCb/Dyn1-Mediated Adaptive Clathrin-Mediated Endocytosis and Epidermal Growth Factor Receptor Signaling Increases Metastasis.

Authors:  Ping-Hung Chen; Nawal Bendris; Yi-Jing Hsiao; Carlos R Reis; Marcel Mettlen; Hsuan-Yu Chen; Sung-Liang Yu; Sandra L Schmid
Journal:  Dev Cell       Date:  2017-02-06       Impact factor: 12.270

5.  The putative Walker A and Walker B motifs of Rrp2 are required for the growth of Borrelia burgdorferi.

Authors:  Zhiming Ouyang; Jianli Zhou
Journal:  Mol Microbiol       Date:  2016-10-26       Impact factor: 3.501

Review 6.  GLOBAL AND TARGETED PROFILING OF GTP-BINDING PROTEINS IN BIOLOGICAL SAMPLES BY MASS SPECTROMETRY.

Authors:  Ming Huang; Yinsheng Wang
Journal:  Mass Spectrom Rev       Date:  2020-06-10       Impact factor: 10.946

7.  Flexible pivoting of dynamin pleckstrin homology domain catalyzes fission: insights into molecular degrees of freedom.

Authors:  Krishnakanth Baratam; Kirtika Jha; Anand Srivastava
Journal:  Mol Biol Cell       Date:  2021-05-12       Impact factor: 4.138

8.  Cryo-EM Studies of Drp1 Reveal Cardiolipin Interactions that Activate the Helical Oligomer.

Authors:  Christopher A Francy; Ryan W Clinton; Chris Fröhlich; Colleen Murphy; Jason A Mears
Journal:  Sci Rep       Date:  2017-09-06       Impact factor: 4.379

9.  Conformational dynamics of dynamin-like MxA revealed by single-molecule FRET.

Authors:  Yang Chen; Lei Zhang; Laura Graf; Bing Yu; Yue Liu; Georg Kochs; Yongfang Zhao; Song Gao
Journal:  Nat Commun       Date:  2017-05-26       Impact factor: 14.919

Review 10.  Roles for Arc in metabotropic glutamate receptor-dependent LTD and synapse elimination: Implications in health and disease.

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Journal:  Semin Cell Dev Biol       Date:  2017-10-14       Impact factor: 7.727

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