Literature DB >> 31298797

The structural biology of the dynamin-related proteins: New insights into a diverse, multitalented family.

Marijn G J Ford1, Joshua S Chappie2.   

Abstract

Dynamin-related proteins are multidomain, mechanochemical GTPases that self-assemble and orchestrate a wide array of cellular processes. Over the past decade, structural insights from X-ray crystallography and cryo-electron microscopy have reshaped our mechanistic understanding of these proteins. Here, we provide a historical perspective on these advances that highlights the structural attributes of different dynamin family members and explores how these characteristics affect GTP hydrolysis, conformational coupling and oligomerization. We also discuss a number of lingering challenges remaining in the field that suggest future directions of study.
© 2019 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  BSE; GTPase; bundle signaling element; dynamin; dynamin-related proteins; helix

Mesh:

Substances:

Year:  2019        PMID: 31298797      PMCID: PMC6876869          DOI: 10.1111/tra.12676

Source DB:  PubMed          Journal:  Traffic        ISSN: 1398-9219            Impact factor:   6.215


  128 in total

1.  Chemical inhibition of the mitochondrial division dynamin reveals its role in Bax/Bak-dependent mitochondrial outer membrane permeabilization.

Authors:  Ann Cassidy-Stone; Jerry E Chipuk; Elena Ingerman; Cheng Song; Choong Yoo; Tomomi Kuwana; Mark J Kurth; Jared T Shaw; Jenny E Hinshaw; Douglas R Green; Jodi Nunnari
Journal:  Dev Cell       Date:  2008-02       Impact factor: 12.270

2.  Structural basis for conformational switching and GTP loading of the large G protein atlastin.

Authors:  Laura J Byrnes; Avtar Singh; Kylan Szeto; Nicole M Benvin; John P O'Donnell; Warren R Zipfel; Holger Sondermann
Journal:  EMBO J       Date:  2013-01-18       Impact factor: 11.598

3.  Mitochondrial contact sites. Lipid composition and dynamics.

Authors:  D Ardail; J P Privat; M Egret-Charlier; C Levrat; F Lerme; P Louisot
Journal:  J Biol Chem       Date:  1990-11-05       Impact factor: 5.157

4.  Importance of the pleckstrin homology domain of dynamin in clathrin-mediated endocytosis.

Authors:  Y Vallis; P Wigge; B Marks; P R Evans; H T McMahon
Journal:  Curr Biol       Date:  1999-03-11       Impact factor: 10.834

Review 5.  The guanine nucleotide-binding switch in three dimensions.

Authors:  I R Vetter; A Wittinghofer
Journal:  Science       Date:  2001-11-09       Impact factor: 47.728

6.  Nucleotide-dependent farnesyl switch orchestrates polymerization and membrane binding of human guanylate-binding protein 1.

Authors:  Sergii Shydlovskyi; Anke Y Zienert; Semra Ince; Christine Dovengerds; Annika Hohendahl; Julia M Dargazanli; Ailisa Blum; Saskia D Günther; Nikolay Kladt; Michael Stürzl; Astrid C Schauss; Miriam Kutsch; Aurélien Roux; Gerrit J K Praefcke; Christian Herrmann
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-23       Impact factor: 11.205

7.  The activation mechanism of Irga6, an interferon-inducible GTPase contributing to mouse resistance against Toxoplasma gondii.

Authors:  Nikolaus Pawlowski; Aliaksandr Khaminets; Julia P Hunn; Natasa Papic; Andreas Schmidt; Revathy C Uthaiah; Rita Lange; Gabriela Vopper; Sascha Martens; Eva Wolf; Jonathan C Howard
Journal:  BMC Biol       Date:  2011-01-28       Impact factor: 7.431

8.  Multiple dynamin family members collaborate to drive mitochondrial division.

Authors:  Jason E Lee; Laura M Westrate; Haoxi Wu; Cynthia Page; Gia K Voeltz
Journal:  Nature       Date:  2016-10-31       Impact factor: 49.962

9.  Steric interference from intrinsically disordered regions controls dynamin-related protein 1 self-assembly during mitochondrial fission.

Authors:  Bin Lu; Bridget Kennedy; Ryan W Clinton; Emily Jue Wang; Daniel McHugh; Natalia Stepanyants; Patrick J Macdonald; Jason A Mears; Xin Qi; Rajesh Ramachandran
Journal:  Sci Rep       Date:  2018-07-18       Impact factor: 4.379

10.  CryoEM structure of MxB reveals a novel oligomerization interface critical for HIV restriction.

Authors:  Frances J D Alvarez; Shaoda He; Juan R Perilla; Sooin Jang; Klaus Schulten; Alan N Engelman; Sjors H W Scheres; Peijun Zhang
Journal:  Sci Adv       Date:  2017-09-15       Impact factor: 14.136

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  10 in total

1.  Structural and functional characterization of the dominant negative P-loop lysine mutation in the dynamin superfamily protein Vps1.

Authors:  Bryan A Tornabene; Natalia V Varlakhanova; Christopher J Hosford; Joshua S Chappie; Marijn G J Ford
Journal:  Protein Sci       Date:  2020-01-31       Impact factor: 6.725

Review 2.  Function and regulation of the divisome for mitochondrial fission.

Authors:  Felix Kraus; Krishnendu Roy; Thomas J Pucadyil; Michael T Ryan
Journal:  Nature       Date:  2021-02-03       Impact factor: 49.962

3.  Light Scattering Techniques to Assess Self-Assembly and Hydrodynamics of Membrane Trafficking Proteins.

Authors:  Marijn G J Ford; Rajesh Ramachandran
Journal:  Methods Mol Biol       Date:  2022

4.  Molecular mechanism of Fast Endophilin-Mediated Endocytosis.

Authors:  Alessandra Casamento; Emmanuel Boucrot
Journal:  Biochem J       Date:  2020-06-26       Impact factor: 3.857

Review 5.  Protein Amphipathic Helix Insertion: A Mechanism to Induce Membrane Fission.

Authors:  Mikhail A Zhukovsky; Angela Filograna; Alberto Luini; Daniela Corda; Carmen Valente
Journal:  Front Cell Dev Biol       Date:  2019-12-10

6.  The hypervariable region of atlastin-1 is a site for intrinsic and extrinsic regulation.

Authors:  Carolyn M Kelly; Laura J Byrnes; Niharika Neela; Holger Sondermann; John P O'Donnell
Journal:  J Cell Biol       Date:  2021-09-21       Impact factor: 10.539

7.  Reconstitution of human atlastin fusion activity reveals autoinhibition by the C terminus.

Authors:  Melissa R Mikolaj; Sarah B Nyenhuis; Daniel Crosby; Samantha Bryce; Jenny E Hinshaw; Tina H Lee
Journal:  J Cell Biol       Date:  2021-11-24       Impact factor: 8.077

8.  A dominant negative mitofusin causes mitochondrial perinuclear clusters because of aberrant tethering.

Authors:  Stephanie R Sloat; Suzanne Hoppins
Journal:  Life Sci Alliance       Date:  2022-10-13

9.  Mammalian Homologue NME3 of DYNAMO1 Regulates Peroxisome Division.

Authors:  Masanori Honsho; Yuichi Abe; Yuuta Imoto; Zee-Fen Chang; Hanna Mandel; Tzipora C Falik-Zaccai; Yukio Fujiki
Journal:  Int J Mol Sci       Date:  2020-10-28       Impact factor: 5.923

10.  A PX-BAR protein Mvp1/SNX8 and a dynamin-like GTPase Vps1 drive endosomal recycling.

Authors:  Sho W Suzuki; Akihiko Oishi; Nadia Nikulin; Jeff R Jorgensen; Matthew G Baile; Scott D Emr
Journal:  Elife       Date:  2021-09-15       Impact factor: 8.140

  10 in total

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