Literature DB >> 26299972

PRC2 Is Required to Maintain Expression of the Maternal Gtl2-Rian-Mirg Locus by Preventing De Novo DNA Methylation in Mouse Embryonic Stem Cells.

Partha Pratim Das1, David A Hendrix2, Effie Apostolou3, Alice H Buchner4, Matthew C Canver5, Semir Beyaz5, Damir Ljuboja5, Rachael Kuintzle6, Woojin Kim5, Rahul Karnik7, Zhen Shao5, Huafeng Xie5, Jian Xu5, Alejandro De Los Angeles5, Yingying Zhang7, Junho Choe8, Don Leong Jia Jun9, Xiaohua Shen5, Richard I Gregory8, George Q Daley1, Alexander Meissner7, Manolis Kellis10, Konrad Hochedlinger11, Jonghwan Kim5, Stuart H Orkin12.   

Abstract

Polycomb Repressive Complex 2 (PRC2) function and DNA methylation (DNAme) are typically correlated with gene repression. Here, we show that PRC2 is required to maintain expression of maternal microRNAs (miRNAs) and long non-coding RNAs (lncRNAs) from the Gtl2-Rian-Mirg locus, which is essential for full pluripotency of iPSCs. In the absence of PRC2, the entire locus becomes transcriptionally repressed due to gain of DNAme at the intergenic differentially methylated regions (IG-DMRs). Furthermore, we demonstrate that the IG-DMR serves as an enhancer of the maternal Gtl2-Rian-Mirg locus. Further analysis reveals that PRC2 interacts physically with Dnmt3 methyltransferases and reduces recruitment to and subsequent DNAme at the IG-DMR, thereby allowing for proper expression of the maternal Gtl2-Rian-Mirg locus. Our observations are consistent with a mechanism through which PRC2 counteracts the action of Dnmt3 methyltransferases at an imprinted locus required for full pluripotency.
Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26299972      PMCID: PMC5384103          DOI: 10.1016/j.celrep.2015.07.053

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  50 in total

1.  Asymmetric regulation of imprinting on the maternal and paternal chromosomes at the Dlk1-Gtl2 imprinted cluster on mouse chromosome 12.

Authors:  Shau-Ping Lin; Neil Youngson; Shuji Takada; Hervé Seitz; Wolf Reik; Martina Paulsen; Jerome Cavaille; Anne C Ferguson-Smith
Journal:  Nat Genet       Date:  2003-08-24       Impact factor: 38.330

2.  DNA-binding factors shape the mouse methylome at distal regulatory regions.

Authors:  Michael B Stadler; Rabih Murr; Lukas Burger; Robert Ivanek; Florian Lienert; Anne Schöler; Erik van Nimwegen; Christiane Wirbelauer; Edward J Oakeley; Dimos Gaidatzis; Vijay K Tiwari; Dirk Schübeler
Journal:  Nature       Date:  2011-12-14       Impact factor: 49.962

3.  Polycomb-dependent H3K27me1 and H3K27me2 regulate active transcription and enhancer fidelity.

Authors:  Karin J Ferrari; Andrea Scelfo; Sriganesh Jammula; Alessandro Cuomo; Iros Barozzi; Alexandra Stützer; Wolfgang Fischle; Tiziana Bonaldi; Diego Pasini
Journal:  Mol Cell       Date:  2013-11-27       Impact factor: 17.970

4.  Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line.

Authors:  Einav Nili Gal-Yam; Gerda Egger; Leo Iniguez; Heather Holster; Steingrímur Einarsson; Xinmin Zhang; Joy C Lin; Gangning Liang; Peter A Jones; Amos Tanay
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-27       Impact factor: 11.205

5.  Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation.

Authors:  Da Jia; Renata Z Jurkowska; Xing Zhang; Albert Jeltsch; Xiaodong Cheng
Journal:  Nature       Date:  2007-08-22       Impact factor: 49.962

Review 6.  The Polycomb complex PRC2 and its mark in life.

Authors:  Raphaël Margueron; Danny Reinberg
Journal:  Nature       Date:  2011-01-20       Impact factor: 49.962

7.  Ascorbic acid prevents loss of Dlk1-Dio3 imprinting and facilitates generation of all-iPS cell mice from terminally differentiated B cells.

Authors:  Matthias Stadtfeld; Effie Apostolou; Francesco Ferrari; Jiho Choi; Ryan M Walsh; Taiping Chen; Steen S K Ooi; Sang Yong Kim; Timothy H Bestor; Toshi Shioda; Peter J Park; Konrad Hochedlinger
Journal:  Nat Genet       Date:  2012-03-04       Impact factor: 38.330

8.  Enhancer decommissioning by LSD1 during embryonic stem cell differentiation.

Authors:  Warren A Whyte; Steve Bilodeau; David A Orlando; Heather A Hoke; Garrett M Frampton; Charles T Foster; Shaun M Cowley; Richard A Young
Journal:  Nature       Date:  2012-02-01       Impact factor: 49.962

9.  The CpG island encompassing the promoter and first exon of human DNMT3L gene is a PcG/TrX response element (PRE).

Authors:  Amitava Basu; Vasanthi Dasari; Rakesh K Mishra; Sanjeev Khosla
Journal:  PLoS One       Date:  2014-04-17       Impact factor: 3.240

10.  PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells.

Authors:  Syuzo Kaneko; Jinsook Son; Steven S Shen; Danny Reinberg; Roberto Bonasio
Journal:  Nat Struct Mol Biol       Date:  2013-10-20       Impact factor: 15.369

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  35 in total

1.  New insights into the imprinted MEG8-DMR in 14q32 and clinical and molecular description of novel patients with Temple syndrome.

Authors:  Jasmin Beygo; Alma Küchler; Gabriele Gillessen-Kaesbach; Beate Albrecht; Jonas Eckle; Thomas Eggermann; Alexandra Gellhaus; Deniz Kanber; Ulrike Kordaß; Hermann-Josef Lüdecke; Sabine Purmann; Eva Rossier; Johannes van de Nes; Ilse M van der Werf; Maren Wenzel; Dagmar Wieczorek; Bernhard Horsthemke; Karin Buiting
Journal:  Eur J Hum Genet       Date:  2017-06-21       Impact factor: 4.246

2.  Long non-coding RNA GAS5, by up-regulating PRC2 and targeting the promoter methylation of miR-424, suppresses multiple malignant phenotypes of glioma.

Authors:  Chen Jin; Jie Zhao; Zhi-Ping Zhang; Ming Wu; Jian Li; Ge-Lei Xiao; Bo Liu; Yu-Xiang Liao; Jing-Ping Liu
Journal:  J Neurooncol       Date:  2020-05-29       Impact factor: 4.130

3.  Aberrant imprinting in mouse trophoblast stem cells established from somatic cell nuclear transfer-derived embryos.

Authors:  Michiko Hirose; Masashi Hada; Satoshi Kamimura; Shogo Matoba; Arata Honda; Kaori Motomura; Narumi Ogonuki; Hossam H Shawki; Kimiko Inoue; Satoru Takahashi; Atsuo Ogura
Journal:  Epigenetics       Date:  2018-08-23       Impact factor: 4.528

4.  Transgenerational Effects of Bisphenol A on Gene Expression and DNA Methylation of Imprinted Genes in Brain.

Authors:  Zuzana Drobná; Anne D Henriksen; Jennifer T Wolstenholme; Catalina Montiel; Philip S Lambeth; Stephen Shang; Erin P Harris; Changqing Zhou; Jodi A Flaws; Mazhar Adli; Emilie F Rissman
Journal:  Endocrinology       Date:  2018-01-01       Impact factor: 4.736

Review 5.  Multimodal Long Noncoding RNA Interaction Networks: Control Panels for Cell Fate Specification.

Authors:  Keriayn N Smith; Sarah C Miller; Gabriele Varani; J Mauro Calabrese; Terry Magnuson
Journal:  Genetics       Date:  2019-12       Impact factor: 4.562

6.  TAF5L and TAF6L Maintain Self-Renewal of Embryonic Stem Cells via the MYC Regulatory Network.

Authors:  Davide Seruggia; Martin Oti; Pratibha Tripathi; Matthew C Canver; Lucy LeBlanc; Dafne C Di Giammartino; Michael J Bullen; Christian M Nefzger; Yu Bo Yang Sun; Rick Farouni; Jose M Polo; Luca Pinello; Effie Apostolou; Jonghwan Kim; Stuart H Orkin; Partha Pratim Das
Journal:  Mol Cell       Date:  2019-04-17       Impact factor: 17.970

7.  A bipartite element with allele-specific functions safeguards DNA methylation imprints at the Dlk1-Dio3 locus.

Authors:  Boaz E Aronson; Laurianne Scourzic; Veevek Shah; Emily Swanzey; Andreas Kloetgen; Alexander Polyzos; Abhishek Sinha; Annabel Azziz; Inbal Caspi; Jiexi Li; Bobbie Pelham-Webb; Rachel A Glenn; Thomas Vierbuchen; Hynek Wichterle; Aristotelis Tsirigos; Meelad M Dawlaty; Matthias Stadtfeld; Effie Apostolou
Journal:  Dev Cell       Date:  2021-10-27       Impact factor: 12.270

8.  Impact of combinatorial dysfunctions of Tet2 and Ezh2 on the epigenome in the pathogenesis of myelodysplastic syndrome.

Authors:  N Hasegawa; M Oshima; G Sashida; H Matsui; S Koide; A Saraya; C Wang; T Muto; K Takane; A Kaneda; K Shimoda; C Nakaseko; K Yokote; A Iwama
Journal:  Leukemia       Date:  2016-10-03       Impact factor: 11.528

9.  QSER1 protects DNA methylation valleys from de novo methylation.

Authors:  Gary Dixon; Heng Pan; Dapeng Yang; Bess P Rosen; Therande Jashari; Nipun Verma; Julian Pulecio; Inbal Caspi; Kihyun Lee; Stephanie Stransky; Abigail Glezer; Chang Liu; Marco Rivas; Ritu Kumar; Yahui Lan; Ingrid Torregroza; Chuan He; Simone Sidoli; Todd Evans; Olivier Elemento; Danwei Huangfu
Journal:  Science       Date:  2021-04-09       Impact factor: 47.728

10.  The Dlk1-Gtl2 Locus Preserves LT-HSC Function by Inhibiting the PI3K-mTOR Pathway to Restrict Mitochondrial Metabolism.

Authors:  Pengxu Qian; Xi C He; Ariel Paulson; Zhenrui Li; Fang Tao; John M Perry; Fengli Guo; Meng Zhao; Lei Zhi; Aparna Venkatraman; Jeffrey S Haug; Tari Parmely; Hua Li; Rick T Dobrowsky; Wen-Xing Ding; Tomohiro Kono; Anne C Ferguson-Smith; Linheng Li
Journal:  Cell Stem Cell       Date:  2015-11-25       Impact factor: 24.633

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