Literature DB >> 33833093

QSER1 protects DNA methylation valleys from de novo methylation.

Gary Dixon1,2, Heng Pan3, Dapeng Yang2, Bess P Rosen1,2, Therande Jashari1,2, Nipun Verma2,4, Julian Pulecio2, Inbal Caspi1,2, Kihyun Lee2, Stephanie Stransky5, Abigail Glezer2, Chang Liu6,7, Marco Rivas6,7, Ritu Kumar8, Yahui Lan8, Ingrid Torregroza8, Chuan He6,7, Simone Sidoli5, Todd Evans8, Olivier Elemento9, Danwei Huangfu10.   

Abstract

DNA methylation is essential to mammalian development, and dysregulation can cause serious pathological conditions. Key enzymes responsible for deposition and removal of DNA methylation are known, but how they cooperate to regulate the methylation landscape remains a central question. Using a knockin DNA methylation reporter, we performed a genome-wide CRISPR-Cas9 screen in human embryonic stem cells to discover DNA methylation regulators. The top screen hit was an uncharacterized gene, QSER1, which proved to be a key guardian of bivalent promoters and poised enhancers of developmental genes, especially those residing in DNA methylation valleys (or canyons). We further demonstrate genetic and biochemical interactions of QSER1 and TET1, supporting their cooperation to safeguard transcriptional and developmental programs from DNMT3-mediated de novo methylation.
Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

Entities:  

Mesh:

Substances:

Year:  2021        PMID: 33833093      PMCID: PMC8185639          DOI: 10.1126/science.abd0875

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  49 in total

1.  FBXL10 protects Polycomb-bound genes from hypermethylation.

Authors:  Mathieu Boulard; John R Edwards; Timothy H Bestor
Journal:  Nat Genet       Date:  2015-04-06       Impact factor: 38.330

Review 2.  Genetic Studies on Mammalian DNA Methyltransferases.

Authors:  Jiameng Dan; Taiping Chen
Journal:  Adv Exp Med Biol       Date:  2016       Impact factor: 2.622

Review 3.  TET-mediated active DNA demethylation: mechanism, function and beyond.

Authors:  Xiaoji Wu; Yi Zhang
Journal:  Nat Rev Genet       Date:  2017-05-30       Impact factor: 53.242

4.  Tracing dynamic changes of DNA methylation at single-cell resolution.

Authors:  Yonatan Stelzer; Chikdu Shakti Shivalila; Frank Soldner; Styliani Markoulaki; Rudolf Jaenisch
Journal:  Cell       Date:  2015-09-24       Impact factor: 41.582

5.  Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.

Authors:  John G Doench; Nicolo Fusi; Meagan Sullender; Mudra Hegde; Emma W Vaimberg; Jennifer Listgarten; Katherine F Donovan; Ian Smith; Zuzana Tothova; Craig Wilen; Robert Orchard; Herbert W Virgin; David E Root
Journal:  Nat Biotechnol       Date:  2016-01-18       Impact factor: 54.908

6.  Genome-wide analyses reveal a role of Polycomb in promoting hypomethylation of DNA methylation valleys.

Authors:  Yuanyuan Li; Hui Zheng; Qiujun Wang; Chen Zhou; Lei Wei; Xuehui Liu; Wenhao Zhang; Yu Zhang; Zhenhai Du; Xiaowo Wang; Wei Xie
Journal:  Genome Biol       Date:  2018-02-08       Impact factor: 13.583

7.  Genome-scale screens identify JNK-JUN signaling as a barrier for pluripotency exit and endoderm differentiation.

Authors:  Qing V Li; Gary Dixon; Nipun Verma; Bess P Rosen; Miriam Gordillo; Renhe Luo; Chunlong Xu; Qiong Wang; Chew-Li Soh; Dapeng Yang; Miguel Crespo; Abhijit Shukla; Qing Xiang; Friederike Dündar; Paul Zumbo; Matthew Witkin; Richard Koche; Doron Betel; Shuibing Chen; Joan Massagué; Ralph Garippa; Todd Evans; Michael A Beer; Danwei Huangfu
Journal:  Nat Genet       Date:  2019-05-20       Impact factor: 38.330

8.  EGR1 recruits TET1 to shape the brain methylome during development and upon neuronal activity.

Authors:  Zhixiong Sun; Xiguang Xu; Jianlin He; Alexander Murray; Ming-An Sun; Xiaoran Wei; Xia Wang; Emmarose McCoig; Evan Xie; Xi Jiang; Liwu Li; Jinsong Zhu; Jianjun Chen; Alexei Morozov; Alicia M Pickrell; Michelle H Theus; Hehuang Xie
Journal:  Nat Commun       Date:  2019-08-29       Impact factor: 14.919

9.  NANOG-dependent function of TET1 and TET2 in establishment of pluripotency.

Authors:  Yael Costa; Junjun Ding; Thorold W Theunissen; Francesco Faiola; Timothy A Hore; Pavel V Shliaha; Miguel Fidalgo; Arven Saunders; Moyra Lawrence; Sabine Dietmann; Satyabrata Das; Dana N Levasseur; Zhe Li; Mingjiang Xu; Wolf Reik; José C R Silva; Jianlong Wang
Journal:  Nature       Date:  2013-02-10       Impact factor: 49.962

Review 10.  Role of TET enzymes in DNA methylation, development, and cancer.

Authors:  Kasper Dindler Rasmussen; Kristian Helin
Journal:  Genes Dev       Date:  2016-04-01       Impact factor: 11.361

View more
  15 in total

Review 1.  A new era in functional genomics screens.

Authors:  Laralynne Przybyla; Luke A Gilbert
Journal:  Nat Rev Genet       Date:  2021-09-20       Impact factor: 53.242

2.  CRISPR screening uncovers a central requirement for HHEX in pancreatic lineage commitment and plasticity restriction.

Authors:  Dapeng Yang; Hyunwoo Cho; Zakieh Tayyebi; Abhijit Shukla; Renhe Luo; Gary Dixon; Valeria Ursu; Stephanie Stransky; Daniel M Tremmel; Sara D Sackett; Richard Koche; Samuel J Kaplan; Qing V Li; Jiwoon Park; Zengrong Zhu; Bess P Rosen; Julian Pulecio; Zhong-Dong Shi; Yaron Bram; Robert E Schwartz; Jon S Odorico; Simone Sidoli; Christopher V Wright; Christina S Leslie; Danwei Huangfu
Journal:  Nat Cell Biol       Date:  2022-07-04       Impact factor: 28.213

3.  Acute lymphoblastic leukemia displays a distinct highly methylated genome.

Authors:  Sara Hetzel; Alexandra L Mattei; Helene Kretzmer; Chunxu Qu; Xiang Chen; Yiping Fan; Gang Wu; Kathryn G Roberts; Selina Luger; Mark Litzow; Jacob Rowe; Elisabeth Paietta; Wendy Stock; Elaine R Mardis; Richard K Wilson; James R Downing; Charles G Mullighan; Alexander Meissner
Journal:  Nat Cancer       Date:  2022-05-19

4.  Genome-wide distribution of 5hmC in the dental pulp of mouse molars and incisors.

Authors:  Pujan Joshi; Anushree Vijaykumar; Badam Enkhmandakh; Mina Mina; Dong-Guk Shin; Dashzeveg Bayarsaihan
Journal:  J Biochem       Date:  2022-01-07       Impact factor: 3.241

5.  Spatiotemporal specificity of correlated DNA methylation and gene expression pairs across different human tissues and stages of brain development.

Authors:  Kangli Wang; Rujia Dai; Yan Xia; Jianghua Tian; Chuan Jiao; Tatiana Mikhailova; Chunling Zhang; Chao Chen; Chunyu Liu
Journal:  Epigenetics       Date:  2021-10-21       Impact factor: 4.861

Review 6.  Epigenome rewiring in human pluripotent stem cells.

Authors:  Jielin Yan; Danwei Huangfu
Journal:  Trends Cell Biol       Date:  2021-12-23       Impact factor: 20.808

7.  PROSER1 mediates TET2 O-GlcNAcylation to regulate DNA demethylation on UTX-dependent enhancers and CpG islands.

Authors:  Xiaokang Wang; Wojciech Rosikiewicz; Yurii Sedkov; Tanner Martinez; Baranda S Hansen; Patrick Schreiner; Jesper Christensen; Beisi Xu; Shondra M Pruett-Miller; Kristian Helin; Hans-Martin Herz
Journal:  Life Sci Alliance       Date:  2021-10-19

8.  Insights into the Association Between QSER1 and M2 Macrophages and Remarkable Malignancy Characteristics in Hepatocellular Carcinoma.

Authors:  Min Wu; Qi-Man Shi; Sai-Li Duan; Deng-Jie Ou-Yang; Pei Chen; Biao Tu; Peng Huang
Journal:  Int J Gen Med       Date:  2022-02-18

9.  Whole Genome DNA Methylation Profiling of D2 Medium Spiny Neurons in Mouse Nucleus Accumbens Using Two Independent Library Preparation Methods.

Authors:  Yuxiang Li; Haiyang Xu; Javed M Chitaman; Jian Feng
Journal:  Genes (Basel)       Date:  2022-02-06       Impact factor: 4.096

10.  Epigenetic reprogramming by TET enzymes impacts co-transcriptional R-loops.

Authors:  João C Sabino; Madalena R de Almeida; Patrícia L Abreu; Ana M Ferreira; Paulo Caldas; Marco M Domingues; Nuno C Santos; Claus M Azzalin; Ana Rita Grosso; Sérgio Fernandes de Almeida
Journal:  Elife       Date:  2022-02-22       Impact factor: 8.140

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.