Literature DB >> 26299963

An Allosteric Interaction Links USP7 to Deubiquitination and Chromatin Targeting of UHRF1.

Zhi-Min Zhang1, Scott B Rothbart2, David F Allison3, Qian Cai4, Joseph S Harrison5, Lin Li4, Yinsheng Wang4, Brian D Strahl5, Gang Greg Wang5, Jikui Song6.   

Abstract

The protein stability and chromatin functions of UHRF1 (ubiquitin-like, containing PHD and RING finger domains, 1) are regulated in a cell-cycle-dependent manner. We report a structural characterization of the complex between UHRF1 and the deubiquitinase USP7. The first two UBL domains of USP7 bind to the polybasic region (PBR) of UHRF1, and this interaction is required for the USP7-mediated deubiquitination of UHRF1. Importantly, we find that the USP7-binding site of the UHRF1 PBR overlaps with the region engaging in an intramolecular interaction with the N-terminal tandem Tudor domain (TTD). We show that the USP7-UHRF1 interaction perturbs the TTD-PBR interaction of UHRF1, thereby shifting the conformation of UHRF1 from a TTD-"occluded" state to a state open for multivalent histone binding. Consistently, introduction of a USP7-interaction-defective mutation to UHRF1 significantly reduces its chromatin association. Together, these results link USP7 interaction to the dynamic deubiquitination and chromatin association of UHRF1.
Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26299963      PMCID: PMC4558366          DOI: 10.1016/j.celrep.2015.07.046

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  31 in total

1.  Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1.

Authors:  Kyohei Arita; Shin Isogai; Takashi Oda; Motoko Unoki; Kazuya Sugita; Naotaka Sekiyama; Keiko Kuwata; Ryuji Hamamoto; Hidehito Tochio; Mamoru Sato; Mariko Ariyoshi; Masahiro Shirakawa
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-25       Impact factor: 11.205

2.  Uhrf1-dependent H3K23 ubiquitylation couples maintenance DNA methylation and replication.

Authors:  Atsuya Nishiyama; Luna Yamaguchi; Jafar Sharif; Yoshikazu Johmura; Takeshi Kawamura; Keiko Nakanishi; Shintaro Shimamura; Kyohei Arita; Tatsuhiko Kodama; Fuyuki Ishikawa; Haruhiko Koseki; Makoto Nakanishi
Journal:  Nature       Date:  2013-09-08       Impact factor: 49.962

3.  Structural insight into coordinated recognition of trimethylated histone H3 lysine 9 (H3K9me3) by the plant homeodomain (PHD) and tandem tudor domain (TTD) of UHRF1 (ubiquitin-like, containing PHD and RING finger domains, 1) protein.

Authors:  Jingdong Cheng; Yi Yang; Jian Fang; Jianxiong Xiao; Tingting Zhu; Fei Chen; Ping Wang; Ze Li; Huirong Yang; Yanhui Xu
Journal:  J Biol Chem       Date:  2012-11-16       Impact factor: 5.157

4.  Accessibility of different histone H3-binding domains of UHRF1 is allosterically regulated by phosphatidylinositol 5-phosphate.

Authors:  Kathy A Gelato; Maria Tauber; Michelle S Ong; Stefan Winter; Kyoko Hiragami-Hamada; Julia Sindlinger; Alexander Lemak; Yvette Bultsma; Scott Houliston; Dirk Schwarzer; Nullin Divecha; Cheryl H Arrowsmith; Wolfgang Fischle
Journal:  Mol Cell       Date:  2014-05-08       Impact factor: 17.970

Review 5.  Perceiving the epigenetic landscape through histone readers.

Authors:  Catherine A Musselman; Marie-Eve Lalonde; Jacques Côté; Tatiana G Kutateladze
Journal:  Nat Struct Mol Biol       Date:  2012-12       Impact factor: 15.369

6.  Multivalent histone engagement by the linked tandem Tudor and PHD domains of UHRF1 is required for the epigenetic inheritance of DNA methylation.

Authors:  Scott B Rothbart; Bradley M Dickson; Michelle S Ong; Krzysztof Krajewski; Scott Houliston; Dmitri B Kireev; Cheryl H Arrowsmith; Brian D Strahl
Journal:  Genes Dev       Date:  2013-06-01       Impact factor: 11.361

7.  Depletion of Uhrf1 inhibits chromosomal DNA replication in Xenopus egg extracts.

Authors:  Elaine M Taylor; Nicola M Bonsu; R Jordan Price; Howard D Lindsay
Journal:  Nucleic Acids Res       Date:  2013-06-20       Impact factor: 16.971

8.  Association of UHRF1 with methylated H3K9 directs the maintenance of DNA methylation.

Authors:  Scott B Rothbart; Krzysztof Krajewski; Nataliya Nady; Wolfram Tempel; Sheng Xue; Aimee I Badeaux; Dalia Barsyte-Lovejoy; Jorge Y Martinez; Mark T Bedford; Stephen M Fuchs; Cheryl H Arrowsmith; Brian D Strahl
Journal:  Nat Struct Mol Biol       Date:  2012-09-30       Impact factor: 15.369

9.  DNA methylation requires a DNMT1 ubiquitin interacting motif (UIM) and histone ubiquitination.

Authors:  Weihua Qin; Patricia Wolf; Nan Liu; Stephanie Link; Martha Smets; Federica La Mastra; Ignasi Forné; Garwin Pichler; David Hörl; Karin Fellinger; Fabio Spada; Ian Marc Bonapace; Axel Imhof; Hartmann Harz; Heinrich Leonhardt
Journal:  Cell Res       Date:  2015-06-12       Impact factor: 25.617

10.  MBD4 interacts with and recruits USP7 to heterochromatic foci.

Authors:  Huan Meng; David J Harrison; Richard R Meehan
Journal:  J Cell Biochem       Date:  2015-03       Impact factor: 4.429

View more
  38 in total

Review 1.  USP7: Structure, substrate specificity, and inhibition.

Authors:  Alexandra Pozhidaeva; Irina Bezsonova
Journal:  DNA Repair (Amst)       Date:  2019-02-16

2.  Stable Isotope Labeling with Amino Acids (SILAC)-Based Proteomics of Primary Human Kidney Cells Reveals a Novel Link between Male Sex Hormones and Impaired Energy Metabolism in Diabetic Kidney Disease.

Authors:  Sergi Clotet; Maria Jose Soler; Marta Riera; Julio Pascual; Fei Fang; Joyce Zhou; Ihor Batruch; Stella K Vasiliou; Apostolos Dimitromanolakis; Clara Barrios; Eleftherios P Diamandis; James W Scholey; Ana Konvalinka
Journal:  Mol Cell Proteomics       Date:  2017-01-04       Impact factor: 5.911

3.  Regulation of Ubiquitin-like with Plant Homeodomain and RING Finger Domain 1 (UHRF1) Protein Stability by Heat Shock Protein 90 Chaperone Machinery.

Authors:  Guangjin Ding; Peilin Chen; Hui Zhang; Xiaojie Huang; Yi Zang; Jiwen Li; Jia Li; Jiemin Wong
Journal:  J Biol Chem       Date:  2016-08-03       Impact factor: 5.157

4.  The CUE1 domain of the SNF2-like chromatin remodeler SMARCAD1 mediates its association with KRAB-associated protein 1 (KAP1) and KAP1 target genes.

Authors:  Dong Ding; Philipp Bergmaier; Parysatis Sachs; Marius Klangwart; Tamina Rückert; Nora Bartels; Jeroen Demmers; Mike Dekker; Raymond A Poot; Jacqueline E Mermoud
Journal:  J Biol Chem       Date:  2017-12-28       Impact factor: 5.157

Review 5.  Coupling Conjugation and Deconjugation Activities to Achieve Cellular Ubiquitin Dynamics.

Authors:  Casey P Nielsen; Jason A MacGurn
Journal:  Trends Biochem Sci       Date:  2020-02-28       Impact factor: 13.807

6.  Dual-utility NLS drives RNF169-dependent DNA damage responses.

Authors:  Liwei An; Yiyang Jiang; Howin H W Ng; Ellen P S Man; Jie Chen; Ui-Soon Khoo; Qingguo Gong; Michael S Y Huen
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-21       Impact factor: 11.205

7.  An Intramolecular Interaction of UHRF1 Reveals Dual Control for Its Histone Association.

Authors:  Linfeng Gao; Xiao-Feng Tan; Shen Zhang; Tianchen Wu; Zhi-Min Zhang; Hui-Wang Ai; Jikui Song
Journal:  Structure       Date:  2018-01-25       Impact factor: 5.006

8.  Data in support of UbSRD: The Ubiquitin Structural Relational Database.

Authors:  Joseph S Harrison; Tim M Jacobs; Kevin Houlihan; Koenraad Van Doorslaer; Brian Kuhlman
Journal:  Data Brief       Date:  2015-10-19

9.  Zinc Finger Protein 618 Regulates the Function of UHRF2 (Ubiquitin-like with PHD and Ring Finger Domains 2) as a Specific 5-Hydroxymethylcytosine Reader.

Authors:  Yidan Liu; Bin Zhang; Henry Kuang; Gautam Korakavi; Lin-Yu Lu; Xiaochun Yu
Journal:  J Biol Chem       Date:  2016-04-27       Impact factor: 5.157

Review 10.  Nuclear deubiquitination in the spotlight: the multifaceted nature of USP7 biology in disease.

Authors:  Radhika Rawat; Daniel T Starczynowski; Panagiotis Ntziachristos
Journal:  Curr Opin Cell Biol       Date:  2019-03-18       Impact factor: 8.382

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.