Literature DB >> 27129234

Zinc Finger Protein 618 Regulates the Function of UHRF2 (Ubiquitin-like with PHD and Ring Finger Domains 2) as a Specific 5-Hydroxymethylcytosine Reader.

Yidan Liu1, Bin Zhang1, Henry Kuang2, Gautam Korakavi2, Lin-Yu Lu3, Xiaochun Yu4.   

Abstract

5-Hydroxymethylcytosine (5hmC) is an epigenetic modification that is generated by ten-eleven translocation (TET) protein-mediated oxidation of 5-methylcytosine (5mC). 5hmC is associated with transcription regulation and is decreased in many cancers including melanoma. Accumulating evidence has suggested that 5hmC is functionally distinct from 5mC. Ubiquitin-like with PHD and ring finger domains 2 (UHRF2) is the first known specific 5hmC reader that has higher affinity to 5hmC than 5mC, suggesting that UHRF2 might mediate 5hmC's function. Structural analysis has revealed the molecular mechanism of UHRF2-5hmC binding in vitro, but it is not clear how UHRF2 recognizes 5hmC in vivo In this study, we have identified zinc figure protein 618 (ZNF618) as a novel binding partner of UHRF2. ZNF618 specifically interacts with UHRF2 but not its paralog UHRF1. Importantly, ZNF618 co-localizes with UHRF2 at genomic loci that are enriched for 5hmC. The ZNF618 chromatin localization is independent of its interaction with UHRF2 and is through its first two zinc fingers. Instead, ZNF618 regulates UHRF2 chromatin localization. Collectively, our study suggests that ZNF618 is a key protein that regulates UHRF2 function as a specific 5hmC reader in vivo.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  5-hydroxymethylcytosine (5-hmC); DNA demethylation; chromatin; molecular biology; molecular cell biology

Mesh:

Substances:

Year:  2016        PMID: 27129234      PMCID: PMC4919451          DOI: 10.1074/jbc.M116.717314

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  36 in total

1.  S phase-dependent interaction with DNMT1 dictates the role of UHRF1 but not UHRF2 in DNA methylation maintenance.

Authors:  Jiqin Zhang; Qinqin Gao; Pishun Li; Xiaoli Liu; Yuanhui Jia; Weicheng Wu; Jiwen Li; Shuo Dong; Haruhiko Koseki; Jiemin Wong
Journal:  Cell Res       Date:  2011-11-08       Impact factor: 25.617

2.  Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.

Authors:  Yu-Fei He; Bin-Zhong Li; Zheng Li; Peng Liu; Yang Wang; Qingyu Tang; Jianping Ding; Yingying Jia; Zhangcheng Chen; Lin Li; Yan Sun; Xiuxue Li; Qing Dai; Chun-Xiao Song; Kangling Zhang; Chuan He; Guo-Liang Xu
Journal:  Science       Date:  2011-08-04       Impact factor: 47.728

3.  Uhrf1-dependent H3K23 ubiquitylation couples maintenance DNA methylation and replication.

Authors:  Atsuya Nishiyama; Luna Yamaguchi; Jafar Sharif; Yoshikazu Johmura; Takeshi Kawamura; Keiko Nakanishi; Shintaro Shimamura; Kyohei Arita; Tatsuhiko Kodama; Fuyuki Ishikawa; Haruhiko Koseki; Makoto Nakanishi
Journal:  Nature       Date:  2013-09-08       Impact factor: 49.962

Review 4.  TET enzymes, TDG and the dynamics of DNA demethylation.

Authors:  Rahul M Kohli; Yi Zhang
Journal:  Nature       Date:  2013-10-24       Impact factor: 49.962

5.  Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine.

Authors:  Chun-Xiao Song; Keith E Szulwach; Ye Fu; Qing Dai; Chengqi Yi; Xuekun Li; Yujing Li; Chih-Hsin Chen; Wen Zhang; Xing Jian; Jing Wang; Li Zhang; Timothy J Looney; Baichen Zhang; Lucy A Godley; Leslie M Hicks; Bruce T Lahn; Peng Jin; Chuan He
Journal:  Nat Biotechnol       Date:  2010-12-12       Impact factor: 54.908

6.  Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells.

Authors:  Hao Wu; Ana C D'Alessio; Shinsuke Ito; Zhibin Wang; Kairong Cui; Keji Zhao; Yi Eve Sun; Yi Zhang
Journal:  Genes Dev       Date:  2011-04-01       Impact factor: 11.361

7.  The UHRF1 protein stimulates the activity and specificity of the maintenance DNA methyltransferase DNMT1 by an allosteric mechanism.

Authors:  Pavel Bashtrykov; Gytis Jankevicius; Renata Z Jurkowska; Sergey Ragozin; Albert Jeltsch
Journal:  J Biol Chem       Date:  2013-12-24       Impact factor: 5.157

8.  Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates.

Authors:  Daniel Globisch; Martin Münzel; Markus Müller; Stylianos Michalakis; Mirko Wagner; Susanne Koch; Tobias Brückl; Martin Biel; Thomas Carell
Journal:  PLoS One       Date:  2010-12-23       Impact factor: 3.240

9.  Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domain.

Authors:  Carina Frauer; Thomas Hoffmann; Sebastian Bultmann; Valentina Casa; M Cristina Cardoso; Iris Antes; Heinrich Leonhardt
Journal:  PLoS One       Date:  2011-06-22       Impact factor: 3.240

Review 10.  Mapping recently identified nucleotide variants in the genome and transcriptome.

Authors:  Chun-Xiao Song; Chengqi Yi; Chuan He
Journal:  Nat Biotechnol       Date:  2012-11       Impact factor: 54.908

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  9 in total

1.  UHRF2 regulates local 5-methylcytosine and suppresses spontaneous seizures.

Authors:  Yidan Liu; Bin Zhang; Xiaoyu Meng; Matthew J Korn; Jack M Parent; Lin-Yu Lu; Xiaochun Yu
Journal:  Epigenetics       Date:  2017-04-12       Impact factor: 4.528

Review 2.  Protein Interactions at Oxidized 5-Methylcytosine Bases.

Authors:  Gerd P Pfeifer; Piroska E Szabó; Jikui Song
Journal:  J Mol Biol       Date:  2019-08-08       Impact factor: 5.469

3.  UHRF2 regulates cell cycle, epigenetics and gene expression to control the timing of retinal progenitor and ganglion cell differentiation.

Authors:  Xiaohong Wang; Aaron L Sarver; Qiyuan Han; Christopher L Seiler; Chencheng Xie; Huarui Lu; Colleen L Forster; Natalia Y Tretyakova; Timothy C Hallstrom
Journal:  Development       Date:  2022-03-14       Impact factor: 6.862

4.  Systematic Investigations on the Metabolic and Transcriptomic Regulation of Lactate in the Human Colon Epithelial Cells.

Authors:  Chongyang Huang; Huanzhou Xu; Xin Zhou; Maili Liu; Jing Li; Chaoyang Liu
Journal:  Int J Mol Sci       Date:  2022-06-02       Impact factor: 6.208

Review 5.  Precision gene editing technology and applications in nephrology.

Authors:  Zachary WareJoncas; Jarryd M Campbell; Gabriel Martínez-Gálvez; William A C Gendron; Michael A Barry; Peter C Harris; Caroline R Sussman; Stephen C Ekker
Journal:  Nat Rev Nephrol       Date:  2018-11       Impact factor: 28.314

6.  Loss of UHRF2 expression is associated with human neoplasia, promoter hypermethylation, decreased 5-hydroxymethylcytosine, and high proliferative activity.

Authors:  Huarui Lu; Sweta Bhoopatiraju; Hongbo Wang; Nolan P Schmitz; Xiaohong Wang; Matthew J Freeman; Colleen L Forster; Michael R Verneris; Michael A Linden; Timothy C Hallstrom
Journal:  Oncotarget       Date:  2016-11-15

7.  Overexpression of UHRF2 in intrahepatic cholangiocarcinoma and its clinical significance.

Authors:  Rui Peng; Xiaoyong Huang; Chi Zhang; Xuan Yang; Yaping Xu; Dousheng Bai
Journal:  Onco Targets Ther       Date:  2017-12-11       Impact factor: 4.147

8.  Single cell RNA-seq reveals genes vital to in vitro fertilized embryos and parthenotes in pigs.

Authors:  Zhi-Qiang Du; Hao Liang; Xiao-Man Liu; Yun-Hua Liu; Chonglong Wang; Cai-Xia Yang
Journal:  Sci Rep       Date:  2021-07-13       Impact factor: 4.379

9.  DNA Methylation and Hydroxymethylation in Primary Colon Cancer and Synchronous Hepatic Metastasis.

Authors:  Silvia Udali; Domenica De Santis; Andrea Ruzzenente; Sara Moruzzi; Filippo Mazzi; Greta Beschin; Stephanie A Tammen; Tommaso Campagnaro; Patrizia Pattini; Oliviero Olivieri; Alfredo Guglielmi; Sang-Woon Choi; Simonetta Friso
Journal:  Front Genet       Date:  2018-01-09       Impact factor: 4.599

  9 in total

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