Literature DB >> 23752590

Multivalent histone engagement by the linked tandem Tudor and PHD domains of UHRF1 is required for the epigenetic inheritance of DNA methylation.

Scott B Rothbart1, Bradley M Dickson, Michelle S Ong, Krzysztof Krajewski, Scott Houliston, Dmitri B Kireev, Cheryl H Arrowsmith, Brian D Strahl.   

Abstract

Histone post-translational modifications regulate chromatin structure and function largely through interactions with effector proteins that often contain multiple histone-binding domains. While significant progress has been made characterizing individual effector domains, the role of paired domains and how they function in a combinatorial fashion within chromatin are poorly defined. Here we show that the linked tandem Tudor and plant homeodomain (PHD) of UHRF1 (ubiquitin-like PHD and RING finger domain-containing protein 1) operates as a functional unit in cells, providing a defined combinatorial readout of a heterochromatin signature within a single histone H3 tail that is essential for UHRF1-directed epigenetic inheritance of DNA methylation. These findings provide critical support for the "histone code" hypothesis, demonstrating that multivalent histone engagement plays a key role in driving a fundamental downstream biological event in chromatin.

Entities:  

Keywords:  DNA methylation; DNMT1; UHRF1; epigenetic inheritance; histone code; multivalency

Mesh:

Substances:

Year:  2013        PMID: 23752590      PMCID: PMC3690401          DOI: 10.1101/gad.220467.113

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  51 in total

Review 1.  Transcription and RNA interference in the formation of heterochromatin.

Authors:  Shiv I S Grewal; Sarah C R Elgin
Journal:  Nature       Date:  2007-05-24       Impact factor: 49.962

2.  Recognition of multivalent histone states associated with heterochromatin by UHRF1 protein.

Authors:  Nataliya Nady; Alexander Lemak; John R Walker; George V Avvakumov; Michael S Kareta; Mayada Achour; Sheng Xue; Shili Duan; Abdellah Allali-Hassani; Xiaobing Zuo; Yun-Xing Wang; Christian Bronner; Frédéric Chédin; Cheryl H Arrowsmith; Sirano Dhe-Paganon
Journal:  J Biol Chem       Date:  2011-04-13       Impact factor: 5.157

3.  Combinatorial readout of histone H3 modifications specifies localization of ATRX to heterochromatin.

Authors:  Sebastian Eustermann; Ji-Chun Yang; Martin J Law; Rachel Amos; Lynda M Chapman; Clare Jelinska; David Garrick; David Clynes; Richard J Gibbons; Daniela Rhodes; Douglas R Higgs; David Neuhaus
Journal:  Nat Struct Mol Biol       Date:  2011-06-12       Impact factor: 15.369

4.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

5.  Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions.

Authors:  Alexander J Ruthenburg; Haitao Li; Thomas A Milne; Scott Dewell; Robert K McGinty; Melanie Yuen; Beatrix Ueberheide; Yali Dou; Tom W Muir; Dinshaw J Patel; C David Allis
Journal:  Cell       Date:  2011-05-19       Impact factor: 41.582

6.  Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation.

Authors:  Da Jia; Renata Z Jurkowska; Xing Zhang; Albert Jeltsch; Xiaodong Cheng
Journal:  Nature       Date:  2007-08-22       Impact factor: 49.962

7.  Peptide microarrays to interrogate the "histone code".

Authors:  Scott B Rothbart; Krzysztof Krajewski; Brian D Strahl; Stephen M Fuchs
Journal:  Methods Enzymol       Date:  2012       Impact factor: 1.600

8.  Structure and hemimethylated CpG binding of the SRA domain from human UHRF1.

Authors:  Chengmin Qian; Side Li; Jean Jakoncic; Lei Zeng; Martin J Walsh; Ming-Ming Zhou
Journal:  J Biol Chem       Date:  2008-10-22       Impact factor: 5.157

9.  UHRF1 targets DNMT1 for DNA methylation through cooperative binding of hemi-methylated DNA and methylated H3K9.

Authors:  Xiaoli Liu; Qinqin Gao; Pishun Li; Qian Zhao; Jiqin Zhang; Jiwen Li; Haruhiko Koseki; Jiemin Wong
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domain.

Authors:  Carina Frauer; Thomas Hoffmann; Sebastian Bultmann; Valentina Casa; M Cristina Cardoso; Iris Antes; Heinrich Leonhardt
Journal:  PLoS One       Date:  2011-06-22       Impact factor: 3.240

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  82 in total

Review 1.  DNA methylation pathways and their crosstalk with histone methylation.

Authors:  Jiamu Du; Lianna M Johnson; Steven E Jacobsen; Dinshaw J Patel
Journal:  Nat Rev Mol Cell Biol       Date:  2015-09       Impact factor: 94.444

Review 2.  Regulation of maintenance DNA methylation via histone ubiquitylation.

Authors:  Atsuya Nishiyama; Luna Yamaguchi; Makoto Nakanishi
Journal:  J Biochem       Date:  2015-11-20       Impact factor: 3.387

3.  A Bifunctional Role for the UHRF1 UBL Domain in the Control of Hemi-methylated DNA-Dependent Histone Ubiquitylation.

Authors:  Paul A DaRosa; Joseph S Harrison; Alex Zelter; Trisha N Davis; Peter Brzovic; Brian Kuhlman; Rachel E Klevit
Journal:  Mol Cell       Date:  2018-11-01       Impact factor: 17.970

4.  Alternative splicing and allosteric regulation modulate the chromatin binding of UHRF1.

Authors:  Maria Tauber; Sarah Kreuz; Alexander Lemak; Papita Mandal; Zhadyra Yerkesh; Alaguraj Veluchamy; Bothayna Al-Gashgari; Abrar Aljahani; Lorena V Cortés-Medina; Dulat Azhibek; Lixin Fan; Michelle S Ong; Shili Duan; Scott Houliston; Cheryl H Arrowsmith; Wolfgang Fischle
Journal:  Nucleic Acids Res       Date:  2020-08-20       Impact factor: 16.971

5.  Nuclear PI5P, Uhrf1, and the road not taken.

Authors:  Nicolas Reynoird; Or Gozani
Journal:  Mol Cell       Date:  2014-06-19       Impact factor: 17.970

6.  Topoisomerase II regulates the maintenance of DNA methylation.

Authors:  Lin-Yu Lu; Henry Kuang; Gautam Korakavi; Xiaochun Yu
Journal:  J Biol Chem       Date:  2014-12-01       Impact factor: 5.157

Review 7.  Detecting and interpreting DNA methylation marks.

Authors:  Ren Ren; John R Horton; Xing Zhang; Robert M Blumenthal; Xiaodong Cheng
Journal:  Curr Opin Struct Biol       Date:  2018-07-19       Impact factor: 6.809

8.  An Intramolecular Interaction of UHRF1 Reveals Dual Control for Its Histone Association.

Authors:  Linfeng Gao; Xiao-Feng Tan; Shen Zhang; Tianchen Wu; Zhi-Min Zhang; Hui-Wang Ai; Jikui Song
Journal:  Structure       Date:  2018-01-25       Impact factor: 5.006

Review 9.  Histone-binding domains: strategies for discovery and characterization.

Authors:  Alex W Wilkinson; Or Gozani
Journal:  Biochim Biophys Acta       Date:  2014-02-11

10.  Data in support of UbSRD: The Ubiquitin Structural Relational Database.

Authors:  Joseph S Harrison; Tim M Jacobs; Kevin Houlihan; Koenraad Van Doorslaer; Brian Kuhlman
Journal:  Data Brief       Date:  2015-10-19
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