Literature DB >> 23211769

Perceiving the epigenetic landscape through histone readers.

Catherine A Musselman1, Marie-Eve Lalonde, Jacques Côté, Tatiana G Kutateladze.   

Abstract

Post-translational modifications (PTMs) of histones provide a fine-tuned mechanism for regulating chromatin structure and dynamics. PTMs can alter direct interactions between histones and DNA and serve as docking sites for protein effectors, or readers, of these PTMs. Binding of the readers recruits or stabilizes various components of the nuclear signaling machinery at specific genomic sites, mediating fundamental DNA-templated processes, including gene transcription and DNA recombination, replication and repair. In this review, we highlight the latest advances in characterizing histone-binding mechanisms and identifying new epigenetic readers and summarize the functional significance of PTM recognition.

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Year:  2012        PMID: 23211769      PMCID: PMC3645987          DOI: 10.1038/nsmb.2436

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  151 in total

1.  Bivalent recognition of nucleosomes by the tandem PHD fingers of the CHD4 ATPase is required for CHD4-mediated repression.

Authors:  Catherine A Musselman; Julita Ramírez; Jennifer K Sims; Robyn E Mansfield; Samuel S Oliver; John M Denu; Joel P Mackay; Paul A Wade; James Hagman; Tatiana G Kutateladze
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-03       Impact factor: 11.205

2.  Structural basis for recognition of H3T3ph and Smac/DIABLO N-terminal peptides by human Survivin.

Authors:  Jiamu Du; Alexander E Kelly; Hironori Funabiki; Dinshaw J Patel
Journal:  Structure       Date:  2012-01-11       Impact factor: 5.006

3.  Structural basis for the recognition of phosphorylated histone h3 by the survivin subunit of the chromosomal passenger complex.

Authors:  A Arockia Jeyaprakash; Claire Basquin; Uma Jayachandran; Elena Conti
Journal:  Structure       Date:  2011-10-25       Impact factor: 5.006

4.  Structural basis for dimethylarginine recognition by the Tudor domains of human SMN and SPF30 proteins.

Authors:  Konstantinos Tripsianes; Tobias Madl; Martin Machyna; Dimitrios Fessas; Clemens Englbrecht; Utz Fischer; Karla M Neugebauer; Michael Sattler
Journal:  Nat Struct Mol Biol       Date:  2011-11-20       Impact factor: 15.369

5.  A poised chromatin platform for TGF-β access to master regulators.

Authors:  Qiaoran Xi; Zhanxin Wang; Alexia-Ileana Zaromytidou; Xiang H-F Zhang; Lai-Fong Chow-Tsang; Jing X Liu; Hyesoo Kim; Afsar Barlas; Katia Manova-Todorova; Vesa Kaartinen; Lorenz Studer; Willie Mark; Dinshaw J Patel; Joan Massagué
Journal:  Cell       Date:  2011-12-23       Impact factor: 41.582

6.  Symmetric dimethylation of H3R2 is a newly identified histone mark that supports euchromatin maintenance.

Authors:  Valentina Migliori; Julius Müller; Sameer Phalke; Diana Low; Marco Bezzi; Wei Chuen Mok; Sanjeeb Kumar Sahu; Jayantha Gunaratne; Paola Capasso; Christian Bassi; Valentina Cecatiello; Ario De Marco; Walter Blackstock; Vladimir Kuznetsov; Bruno Amati; Marina Mapelli; Ernesto Guccione
Journal:  Nat Struct Mol Biol       Date:  2012-01-08       Impact factor: 15.369

Review 7.  Epigenetic virtues of chromodomains.

Authors:  Bartlomiej J Blus; Kimberly Wiggins; Sepideh Khorasanizadeh
Journal:  Crit Rev Biochem Mol Biol       Date:  2011-10-25       Impact factor: 8.250

8.  The double-bromodomain proteins Bdf1 and Bdf2 modulate chromatin structure to regulate S-phase stress response in Schizosaccharomyces pombe.

Authors:  Mikael V Garabedian; Chiaki Noguchi; Melissa A Ziegler; Mukund M Das; Tanu Singh; Logan J Harper; Adam R Leman; Lyne Khair; Bettina A Moser; Toru M Nakamura; Eishi Noguchi
Journal:  Genetics       Date:  2011-11-17       Impact factor: 4.562

Review 9.  Handpicking epigenetic marks with PHD fingers.

Authors:  Catherine A Musselman; Tatiana G Kutateladze
Journal:  Nucleic Acids Res       Date:  2011-08-03       Impact factor: 16.971

10.  Recognition of enhancer element-specific histone methylation by TIP60 in transcriptional activation.

Authors:  Kwang Won Jeong; Kyunghwan Kim; Alan Jialun Situ; Tobias S Ulmer; Woojin An; Michael R Stallcup
Journal:  Nat Struct Mol Biol       Date:  2011-11-13       Impact factor: 15.369

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  328 in total

1.  Nucleosome competition reveals processive acetylation by the SAGA HAT module.

Authors:  Alison E Ringel; Anne M Cieniewicz; Sean D Taverna; Cynthia Wolberger
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-23       Impact factor: 11.205

Review 2.  The upstreams and downstreams of H3K79 methylation by DOT1L.

Authors:  Hanneke Vlaming; Fred van Leeuwen
Journal:  Chromosoma       Date:  2016-01-04       Impact factor: 4.316

Review 3.  Small Molecule Inhibitors of Protein Arginine Methyltransferases.

Authors:  Hao Hu; Kun Qian; Meng-Chiao Ho; Y George Zheng
Journal:  Expert Opin Investig Drugs       Date:  2016-02-16       Impact factor: 6.206

Review 4.  Unravelling the genomic targets of small molecules using high-throughput sequencing.

Authors:  Raphaël Rodriguez; Kyle M Miller
Journal:  Nat Rev Genet       Date:  2014-10-14       Impact factor: 53.242

5.  Emerging Chemistry Strategies for Engineering Native Chromatin.

Authors:  Yael David; Tom W Muir
Journal:  J Am Chem Soc       Date:  2017-06-27       Impact factor: 15.419

Review 6.  Transcriptional and Epigenomic Regulation of Adipogenesis.

Authors:  Ji-Eun Lee; Hannah Schmidt; Binbin Lai; Kai Ge
Journal:  Mol Cell Biol       Date:  2019-05-14       Impact factor: 4.272

7.  Distinct Cellular Assembly Stoichiometry of Polycomb Complexes on Chromatin Revealed by Single-molecule Chromatin Immunoprecipitation Imaging.

Authors:  Roubina Tatavosian; Chao Yu Zhen; Huy Nguyen Duc; Maggie M Balas; Aaron M Johnson; Xiaojun Ren
Journal:  J Biol Chem       Date:  2015-09-17       Impact factor: 5.157

8.  Double duty: ZMYND8 in the DNA damage response and cancer.

Authors:  Fade Gong; Kyle M Miller
Journal:  Cell Cycle       Date:  2018-03-19       Impact factor: 4.534

9.  A histone reader becomes the readout.

Authors:  Catherine A Musselman; Tatiana G Kutateladze
Journal:  J Biol Chem       Date:  2018-05-11       Impact factor: 5.157

10.  Structural Insight into Recognition of Methylated Histone H3K4 by Set3.

Authors:  Jovylyn Gatchalian; Muzaffar Ali; Forest H Andrews; Yi Zhang; Alexander S Barrett; Tatiana G Kutateladze
Journal:  J Mol Biol       Date:  2016-09-30       Impact factor: 5.469

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