Literature DB >> 26293606

Structural and functional liaisons between transposable elements and satellite DNAs.

Nevenka Meštrović1, Brankica Mravinac1, Martina Pavlek1, Tanja Vojvoda-Zeljko1, Eva Šatović1, Miroslav Plohl2.   

Abstract

Transposable elements (TEs) and satellite DNAs (satDNAs) are typically identified as major repetitive DNA components in eukaryotic genomes. TEs are DNA segments able to move throughout a genome while satDNAs are tandemly repeated sequences organized in long arrays. Both classes of repetitive sequences are extremely diverse, and many TEs and satDNAs exist within a genome. Although they differ in structure, genomic organization, mechanisms of spread, and evolutionary dynamics, TEs and satDNAs can share sequence similarity and organizational patterns, thus indicating that complex mutual relationships can determine their evolution, and ultimately define roles they might have on genome architecture and function. Motivated by accumulating data about sequence elements that incorporate features of both TEs and satDNAs, here we present an overview of their structural and functional liaisons.

Keywords:  DNA transposons; mobile elements; retrotransposons; satellite DNA; tandem repeats

Mesh:

Substances:

Year:  2015        PMID: 26293606     DOI: 10.1007/s10577-015-9483-7

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  94 in total

Review 1.  The evolutionary dynamics of transposable elements in eukaryote genomes.

Authors:  M Tollis; S Boissinot
Journal:  Genome Dyn       Date:  2012-06-25

2.  Relevance of satellite DNA genomic distribution in phylogenetic analysis: a case study with root-knot nematodes of the genus Meloidogyne.

Authors:  Nevenka Mestrović; Miroslav Plohl; Philippe Castagnone-Sereno
Journal:  Mol Phylogenet Evol       Date:  2008-10-26       Impact factor: 4.286

3.  Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition.

Authors:  Q Feng; J V Moran; H H Kazazian; J D Boeke
Journal:  Cell       Date:  1996-11-29       Impact factor: 41.582

4.  Molecular paleontology of transposable elements from Arabidopsis thaliana.

Authors:  V V Kapitonov; J Jurka
Journal:  Genetica       Date:  1999       Impact factor: 1.082

5.  Tnat1 and Tnat2 from Arabidopsis thaliana: novel transposable elements with tandem repeat sequences.

Authors:  K Noma; E Ohtsubo
Journal:  DNA Res       Date:  2000-02-28       Impact factor: 4.458

6.  Variable and hierarchical size distribution of L1-retroelement-enriched CENP-A clusters within a functional human neocentromere.

Authors:  Anderly C Chueh; Lee H Wong; Nicholas Wong; K H Andy Choo
Journal:  Hum Mol Genet       Date:  2004-11-10       Impact factor: 6.150

7.  Pearl, a novel family of putative transposable elements in bivalve mollusks.

Authors:  Patrick M Gaffney; James C Pierce; Antony G Mackinley; Deborah A Titchen; Wendy K Glenn
Journal:  J Mol Evol       Date:  2003-03       Impact factor: 2.395

8.  Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals.

Authors:  Claudio Casola; Donald Hucks; Cédric Feschotte
Journal:  Mol Biol Evol       Date:  2007-10-16       Impact factor: 16.240

9.  Three new satellite sequences and a mobile element found inside HSP70 introns of the Mediterranean mussel (Mytilus galloprovincialis).

Authors:  Antonis Kourtidis; Elena Drosopoulou; Chrysoula N Pantzartzi; Chariton C Chintiroglou; Zacharias G Scouras
Journal:  Genome       Date:  2006-11       Impact factor: 2.166

10.  Tandem-repetitive noncoding DNA: forms and forces.

Authors:  W Stephan
Journal:  Mol Biol Evol       Date:  1989-03       Impact factor: 16.240

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  48 in total

1.  Repetitive DNA in eukaryotic genomes.

Authors:  Maria Assunta Biscotti; Ettore Olmo; J S Pat Heslop-Harrison
Journal:  Chromosome Res       Date:  2015-09       Impact factor: 5.239

2.  Satellite DNA content illuminates the ancestry of a supernumerary (B) chromosome.

Authors:  Francisco J Ruiz-Ruano; Josefa Cabrero; María Dolores López-León; Juan Pedro M Camacho
Journal:  Chromosoma       Date:  2016-08-13       Impact factor: 4.316

3.  Helitrons in Drosophila: Chromatin modulation and tandem insertions.

Authors:  Guilherme B Dias; Pedro Heringer; Gustavo C S Kuhn
Journal:  Mob Genet Elements       Date:  2016-03-07

4.  High-throughput analysis of satellite DNA in the grasshopper Pyrgomorpha conica reveals abundance of homologous and heterologous higher-order repeats.

Authors:  Francisco J Ruiz-Ruano; Jesús Castillo-Martínez; Josefa Cabrero; Ricardo Gómez; Juan Pedro M Camacho; María Dolores López-León
Journal:  Chromosoma       Date:  2018-03-16       Impact factor: 4.316

5.  Characterization of repeated DNA sequences in genomes of blue-flowered flax.

Authors:  Nadezhda L Bolsheva; Nataliya V Melnikova; Ilya V Kirov; Alexey A Dmitriev; George S Krasnov; Аlexandra V Amosova; Tatiana E Samatadze; Olga Yu Yurkevich; Svyatoslav A Zoshchuk; Anna V Kudryavtseva; Olga V Muravenko
Journal:  BMC Evol Biol       Date:  2019-02-26       Impact factor: 3.260

6.  Two new miniature inverted-repeat transposable elements in the genome of the clam Donax trunculus.

Authors:  Eva Šatović; Miroslav Plohl
Journal:  Genetica       Date:  2017-06-26       Impact factor: 1.082

7.  Study and Physical Mapping of the Species-Specific Tandem Repeat CS-237 Linked with 45S Ribosomal DNA Intergenic Spacer in Cannabis sativa L.

Authors:  Oleg S Alexandrov; Dmitry V Romanov; Mikhail G Divashuk; Olga V Razumova; Daniil S Ulyanov; Gennady I Karlov
Journal:  Plants (Basel)       Date:  2022-05-24

8.  The Cassandra retrotransposon landscape in sugar beet (Beta vulgaris) and related Amaranthaceae: recombination and re-shuffling lead to a high structural variability.

Authors:  Sophie Maiwald; Beatrice Weber; Kathrin M Seibt; Thomas Schmidt; Tony Heitkam
Journal:  Ann Bot       Date:  2021-01-01       Impact factor: 4.357

9.  An eutherian intronic sequence gave rise to a major satellite DNA in Platyrrhini.

Authors:  Mirela Pelizaro Valeri; Guilherme Borges Dias; Valéria do Socorro Pereira; Gustavo Campos Silva Kuhn; Marta Svartman
Journal:  Biol Lett       Date:  2018-01       Impact factor: 3.703

10.  Satellitome Analysis of the Pacific Oyster Crassostrea gigas Reveals New Pattern of Satellite DNA Organization, Highly Scattered across the Genome.

Authors:  Monika Tunjić-Cvitanić; Juan J Pasantes; Daniel García-Souto; Tonči Cvitanić; Miroslav Plohl; Eva Šatović-Vukšić
Journal:  Int J Mol Sci       Date:  2021-06-24       Impact factor: 5.923

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