Literature DB >> 26293605

Satellite non-coding RNAs: the emerging players in cells, cellular pathways and cancer.

Daniela Ferreira1,2, Susana Meles1,2, Ana Escudeiro1,2, Ana Mendes-da-Silva1,2, Filomena Adega1,2, Raquel Chaves3,4.   

Abstract

For several decades, transcriptional inactivity was considered as one of the particular features of constitutive heterochromatin and, therefore, of its major component, satellite DNA sequences. However, more recently, succeeding evidences have demonstrated that these sequences can indeed be transcribed, yielding satellite non-coding RNAs with important roles in the organization and regulation of genomes. Since then, several studies have been conducted, trying to understand the function(s) of these sequences not only in the normal but also in cancer genomes. It is thought that the association between cancer and satncRNAs is mostly due to the influence of these transcripts in the genome instability, a hallmark of cancer. The few reports on satellite DNA transcription in cancer contexts point to its overexpression; however, this scenario may be far more complex, variable, and influenced by a number of factors and the exact role of satncRNAs in the oncogenic process remains poorly understood. The greater is the knowledge on the association of satncRNAs with cancer, the greater would be the opportunity to assist cancer treatment, either by the design of effective therapies targeting these molecules or by using them as biomarkers in cancer diagnosis, prognosis, and with predictive value.

Entities:  

Keywords:  Biomarkers; Cancer; Genomic instability; Satellite DNA; Satellite non-coding RNA

Mesh:

Substances:

Year:  2015        PMID: 26293605     DOI: 10.1007/s10577-015-9482-8

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  87 in total

1.  Expression of mRNA for DNA methyltransferases and methyl-CpG-binding proteins and DNA methylation status on CpG islands and pericentromeric satellite regions during human hepatocarcinogenesis.

Authors:  Y Saito; Y Kanai; M Sakamoto; H Saito; H Ishii; S Hirohashi
Journal:  Hepatology       Date:  2001-03       Impact factor: 17.425

2.  Tumour suppressors: Silencing heterochromatin.

Authors:  Nicola McCarthy
Journal:  Nat Rev Cancer       Date:  2011-09-29       Impact factor: 60.716

Review 3.  Why repetitive DNA is essential to genome function.

Authors:  James A Shapiro; Richard von Sternberg
Journal:  Biol Rev Camb Philos Soc       Date:  2005-05

Review 4.  RNA meets chromatin.

Authors:  Emily Bernstein; C David Allis
Journal:  Genes Dev       Date:  2005-07-15       Impact factor: 11.361

5.  Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps.

Authors:  William J Murphy; Denis M Larkin; Annelie Everts-van der Wind; Guillaume Bourque; Glenn Tesler; Loretta Auvil; Jonathan E Beever; Bhanu P Chowdhary; Francis Galibert; Lisa Gatzke; Christophe Hitte; Stacey N Meyers; Denis Milan; Elaine A Ostrander; Greg Pape; Heidi G Parker; Terje Raudsepp; Margarita B Rogatcheva; Lawrence B Schook; Loren C Skow; Michael Welge; James E Womack; Stephen J O'brien; Pavel A Pevzner; Harris A Lewin
Journal:  Science       Date:  2005-07-22       Impact factor: 47.728

6.  Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures.

Authors:  Terrence N Wong; Tobin R Sosnick; Tao Pan
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-06       Impact factor: 11.205

Review 7.  Satellite DNA in the karyotype evolution of domestic animals--clinical considerations.

Authors:  F Adega; H Guedes-Pinto; R Chaves
Journal:  Cytogenet Genome Res       Date:  2009-12-09       Impact factor: 1.636

8.  DNA hypomethylation and ovarian cancer biology.

Authors:  Martin Widschwendter; Guanchao Jiang; Christian Woods; Hannes M Müller; Heidi Fiegl; Georg Goebel; Christian Marth; Elisabeth Müller-Holzner; Alain G Zeimet; Peter W Laird; Melanie Ehrlich
Journal:  Cancer Res       Date:  2004-07-01       Impact factor: 12.701

9.  Characterization of RNA in exosomes secreted by human breast cancer cell lines using next-generation sequencing.

Authors:  Piroon Jenjaroenpun; Yuliya Kremenska; Vrundha M Nair; Maksym Kremenskoy; Baby Joseph; Igor V Kurochkin
Journal:  PeerJ       Date:  2013-11-05       Impact factor: 2.984

10.  Non-coding RNA derived from a conservative subtelomeric tandem repeat in chicken and Japanese quail somatic cells.

Authors:  Irina Trofimova; Darya Popova; Elena Vasilevskaya; Alla Krasikova
Journal:  Mol Cytogenet       Date:  2014-12-23       Impact factor: 2.009

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  25 in total

Review 1.  Transcription of tandemly repetitive DNA: functional roles.

Authors:  Maria Assunta Biscotti; Adriana Canapa; Mariko Forconi; Ettore Olmo; Marco Barucca
Journal:  Chromosome Res       Date:  2015-09       Impact factor: 5.239

2.  Repetitive DNA in eukaryotic genomes.

Authors:  Maria Assunta Biscotti; Ettore Olmo; J S Pat Heslop-Harrison
Journal:  Chromosome Res       Date:  2015-09       Impact factor: 5.239

Review 3.  Transcription of highly repetitive tandemly organized DNA in amphibians and birds: A historical overview and modern concepts.

Authors:  Irina Trofimova; Alla Krasikova
Journal:  RNA Biol       Date:  2016-10-20       Impact factor: 4.652

4.  W-enriched satellite sequence in the Indian meal moth, Plodia interpunctella (Lepidoptera, Pyralidae).

Authors:  Martina Dalíková; Magda Zrzavá; Svatava Kubíčková; František Marec
Journal:  Chromosome Res       Date:  2017-05-12       Impact factor: 5.239

Review 5.  Epigenetic Regulation of Centromere Chromatin Stability by Dietary and Environmental Factors.

Authors:  Diego Hernández-Saavedra; Rita S Strakovsky; Patricia Ostrosky-Wegman; Yuan-Xiang Pan
Journal:  Adv Nutr       Date:  2017-11-15       Impact factor: 8.701

Review 6.  Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time.

Authors:  Mariana Lopes; Sandra Louzada; Margarida Gama-Carvalho; Raquel Chaves
Journal:  Int J Mol Sci       Date:  2021-04-29       Impact factor: 5.923

Review 7.  Sequence, Chromatin and Evolution of Satellite DNA.

Authors:  Jitendra Thakur; Jenika Packiaraj; Steven Henikoff
Journal:  Int J Mol Sci       Date:  2021-04-21       Impact factor: 5.923

8.  Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.

Authors:  Mathys Grapotte; Manu Saraswat; Chloé Bessière; Christophe Menichelli; Jordan A Ramilowski; Jessica Severin; Yoshihide Hayashizaki; Masayoshi Itoh; Michihira Tagami; Mitsuyoshi Murata; Miki Kojima-Ishiyama; Shohei Noma; Shuhei Noguchi; Takeya Kasukawa; Akira Hasegawa; Harukazu Suzuki; Hiromi Nishiyori-Sueki; Martin C Frith; Clément Chatelain; Piero Carninci; Michiel J L de Hoon; Wyeth W Wasserman; Laurent Bréhélin; Charles-Henri Lecellier
Journal:  Nat Commun       Date:  2021-06-02       Impact factor: 14.919

9.  FA-SAT Is an Old Satellite DNA Frozen in Several Bilateria Genomes.

Authors:  Raquel Chaves; Daniela Ferreira; Ana Mendes-da-Silva; Susana Meles; Filomena Adega
Journal:  Genome Biol Evol       Date:  2017-11-01       Impact factor: 3.416

10.  The satellite DNA AflaSAT-1 in the A and B chromosomes of the grasshopper Abracris flavolineata.

Authors:  Diogo Milani; Érica Ramos; Vilma Loreto; Dardo Andrea Martí; Adauto Lima Cardoso; Karen Cristiane Martinez de Moraes; Cesar Martins; Diogo Cavalcanti Cabral-de-Mello
Journal:  BMC Genet       Date:  2017-08-29       Impact factor: 2.797

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