Literature DB >> 16040707

Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps.

William J Murphy1, Denis M Larkin, Annelie Everts-van der Wind, Guillaume Bourque, Glenn Tesler, Loretta Auvil, Jonathan E Beever, Bhanu P Chowdhary, Francis Galibert, Lisa Gatzke, Christophe Hitte, Stacey N Meyers, Denis Milan, Elaine A Ostrander, Greg Pape, Heidi G Parker, Terje Raudsepp, Margarita B Rogatcheva, Lawrence B Schook, Loren C Skow, Michael Welge, James E Womack, Stephen J O'brien, Pavel A Pevzner, Harris A Lewin.   

Abstract

The genome organizations of eight phylogenetically distinct species from five mammalian orders were compared in order to address fundamental questions relating to mammalian chromosomal evolution. Rates of chromosome evolution within mammalian orders were found to increase since the Cretaceous-Tertiary boundary. Nearly 20% of chromosome breakpoint regions were reused during mammalian evolution; these reuse sites are also enriched for centromeres. Analysis of gene content in and around evolutionary breakpoint regions revealed increased gene density relative to the genome-wide average. We found that segmental duplications populate the majority of primate-specific breakpoints and often flank inverted chromosome segments, implicating their role in chromosomal rearrangement.

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Year:  2005        PMID: 16040707     DOI: 10.1126/science.1111387

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  224 in total

1.  Advanced comparative cytogenetic analysis of X chromosomes in river buffalo, cattle, sheep, and human.

Authors:  A Perucatti; V Genualdo; A Iannuzzi; A Rebl; D Di Berardino; T Goldammer; Leopoldo Iannuzzi
Journal:  Chromosome Res       Date:  2012-06-06       Impact factor: 5.239

2.  Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus.

Authors:  Julie E Horvath; Christina B Sheedy; Stephanie L Merrett; Abdoulaye Banire Diallo; David L Swofford; Eric D Green; Huntington F Willard
Journal:  Genome Res       Date:  2011-04-25       Impact factor: 9.043

Review 3.  Making a long story short: noncoding RNAs and chromosome change.

Authors:  J D Brown; S E Mitchell; R J O'Neill
Journal:  Heredity (Edinb)       Date:  2011-11-09       Impact factor: 3.821

4.  Molecular cytogenetics: karyotype evolution, phylogenomics and future prospects.

Authors:  T J Robinson; F Yang
Journal:  Heredity (Edinb)       Date:  2012-01       Impact factor: 3.821

5.  Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila.

Authors:  Marcin von Grotthuss; Michael Ashburner; José M Ranz
Journal:  Genome Res       Date:  2010-07-02       Impact factor: 9.043

6.  Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution.

Authors:  Florent Murat; Jian-Hong Xu; Eric Tannier; Michael Abrouk; Nicolas Guilhot; Caroline Pont; Joachim Messing; Jérôme Salse
Journal:  Genome Res       Date:  2010-09-28       Impact factor: 9.043

7.  Reconstruction and evolutionary history of eutherian chromosomes.

Authors:  Jaebum Kim; Marta Farré; Loretta Auvil; Boris Capitanu; Denis M Larkin; Jian Ma; Harris A Lewin
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-19       Impact factor: 11.205

8.  A procedure for image enhancement in chromosome painting.

Authors:  W Rens; K Moderegger; H Skelton; O Clarke; V Trifonov; M A Ferguson-Smith
Journal:  Chromosome Res       Date:  2006-07-12       Impact factor: 5.239

9.  A high-resolution cat radiation hybrid and integrated FISH mapping resource for phylogenomic studies across Felidae.

Authors:  Brian W Davis; Terje Raudsepp; Alison J Pearks Wilkerson; Richa Agarwala; Alejandro A Schäffer; Marlys Houck; Bhanu P Chowdhary; William J Murphy
Journal:  Genomics       Date:  2008-11-05       Impact factor: 5.736

10.  Genomic regulatory blocks underlie extensive microsynteny conservation in insects.

Authors:  Pär G Engström; Shannan J Ho Sui; Oyvind Drivenes; Thomas S Becker; Boris Lenhard
Journal:  Genome Res       Date:  2007-11-07       Impact factor: 9.043

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