Literature DB >> 26283385

Confounding effects of oxygen and temperature on the TEX86 signature of marine Thaumarchaeota.

Wei Qin1, Laura T Carlson2, E Virginia Armbrust2, Allan H Devol2, James W Moffett3, David A Stahl4, Anitra E Ingalls5.   

Abstract

Marine ammonia-oxidizing archaea (AOA) are among the most abundant of marine microorganisms, spanning nearly the entire water column of diverse oceanic provinces. Historical patterns of abundance are preserved in sediments in the form of their distinctive glycerol dibiphytanyl glycerol tetraether (GDGT) membrane lipids. The correlation between the composition of GDGTs in surface sediment and the overlying annual average sea surface temperature forms the basis for a paleotemperature proxy (TEX86) that is used to reconstruct surface ocean temperature as far back as the Middle Jurassic. However, mounting evidence suggests that factors other than temperature could also play an important role in determining GDGT distributions. We here use a study set of four marine AOA isolates to demonstrate that these closely related strains generate different TEX86-temperature relationships and that oxygen (O2) concentration is at least as important as temperature in controlling TEX86 values in culture. All of the four strains characterized showed a unique membrane compositional response to temperature, with TEX86-inferred temperatures varying as much as 12 °C from the incubation temperatures. In addition, both linear and nonlinear TEX86-temperature relationships were characteristic of individual strains. Increasing relative abundance of GDGT-2 and GDGT-3 with increasing O2 limitation, at the expense of GDGT-1, led to significant elevations in TEX86-derived temperature. Although the adaptive significance of GDGT compositional changes in response to both temperature and O2 is unclear, this observation necessitates a reassessment of archaeal lipid-based paleotemperature proxies, particularly in records that span low-oxygen events or underlie oxygen minimum zones.

Entities:  

Keywords:  GDGT; TEX86; Thaumarchaeota; oxygen; temperature

Mesh:

Substances:

Year:  2015        PMID: 26283385      PMCID: PMC4568219          DOI: 10.1073/pnas.1501568112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol.

Authors:  José R de la Torre; Christopher B Walker; Anitra E Ingalls; Martin Könneke; David A Stahl
Journal:  Environ Microbiol       Date:  2008-01-19       Impact factor: 5.491

2.  Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea.

Authors:  Rachel E A Horak; Wei Qin; Andy J Schauer; E Virginia Armbrust; Anitra E Ingalls; James W Moffett; David A Stahl; Allan H Devol
Journal:  ISME J       Date:  2013-05-09       Impact factor: 10.302

3.  Molecular modeling of archaebacterial bipolar tetraether lipid membranes.

Authors:  J L Gabriel; P L Chong
Journal:  Chem Phys Lipids       Date:  2000-04       Impact factor: 3.329

4.  Analysis of intact tetraether lipids in archaeal cell material and sediments by high performance liquid chromatography/atmospheric pressure chemical ionization mass spectrometry.

Authors:  E C Hopmans; S Schouten; R D Pancost; M T van der Meer; J S Sinninghe Damsté
Journal:  Rapid Commun Mass Spectrom       Date:  2000       Impact factor: 2.419

5.  Temperature and pH controls on glycerol dibiphytanyl glycerol tetraether lipid composition in the hyperthermophilic crenarchaeon Acidilobus sulfurireducens.

Authors:  Eric S Boyd; Ann Pearson; Yundan Pi; Wen-Jun Li; Yi Ge Zhang; Liu He; Chuanlun L Zhang; Gill G Geesey
Journal:  Extremophiles       Date:  2010-12-02       Impact factor: 2.395

6.  Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation.

Authors:  Wei Qin; Shady A Amin; Willm Martens-Habbena; Christopher B Walker; Hidetoshi Urakawa; Allan H Devol; Anitra E Ingalls; James W Moffett; E Virginia Armbrust; David A Stahl
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-11       Impact factor: 11.205

7.  Anthropogenic ocean acidification over the twenty-first century and its impact on calcifying organisms.

Authors:  James C Orr; Victoria J Fabry; Olivier Aumont; Laurent Bopp; Scott C Doney; Richard A Feely; Anand Gnanadesikan; Nicolas Gruber; Akio Ishida; Fortunat Joos; Robert M Key; Keith Lindsay; Ernst Maier-Reimer; Richard Matear; Patrick Monfray; Anne Mouchet; Raymond G Najjar; Gian-Kasper Plattner; Keith B Rodgers; Christopher L Sabine; Jorge L Sarmiento; Reiner Schlitzer; Richard D Slater; Ian J Totterdell; Marie-France Weirig; Yasuhiro Yamanaka; Andrew Yool
Journal:  Nature       Date:  2005-09-29       Impact factor: 49.962

8.  The production of nitric oxide by marine ammonia-oxidizing archaea and inhibition of archaeal ammonia oxidation by a nitric oxide scavenger.

Authors:  Willm Martens-Habbena; Wei Qin; Rachel E A Horak; Hidetoshi Urakawa; Andrew J Schauer; James W Moffett; E Virginia Armbrust; Anitra E Ingalls; Allan H Devol; David A Stahl
Journal:  Environ Microbiol       Date:  2015-01-27       Impact factor: 5.491

9.  Microbial metatranscriptomics in a permanent marine oxygen minimum zone.

Authors:  Frank J Stewart; Osvaldo Ulloa; Edward F DeLong
Journal:  Environ Microbiol       Date:  2011-01-07       Impact factor: 5.491

10.  Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean.

Authors:  Sara A Lincoln; Brenner Wai; John M Eppley; Matthew J Church; Roger E Summons; Edward F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-19       Impact factor: 11.205

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  17 in total

1.  Influence of ammonia oxidation rate on thaumarchaeal lipid composition and the TEX86 temperature proxy.

Authors:  Sarah J Hurley; Felix J Elling; Martin Könneke; Carolyn Buchwald; Scott D Wankel; Alyson E Santoro; Julius Sebastian Lipp; Kai-Uwe Hinrichs; Ann Pearson
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-28       Impact factor: 11.205

2.  GDGT cyclization proteins identify the dominant archaeal sources of tetraether lipids in the ocean.

Authors:  Zhirui Zeng; Xiao-Lei Liu; Kristen R Farley; Jeremy H Wei; William W Metcalf; Roger E Summons; Paula V Welander
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-07       Impact factor: 11.205

3.  Two distinct pools of B12 analogs reveal community interdependencies in the ocean.

Authors:  Katherine R Heal; Wei Qin; Francois Ribalet; Anthony D Bertagnolli; Willow Coyote-Maestas; Laura R Hmelo; James W Moffett; Allan H Devol; E Virginia Armbrust; David A Stahl; Anitra E Ingalls
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-27       Impact factor: 11.205

Review 4.  Lipid biomarkers: molecular tools for illuminating the history of microbial life.

Authors:  Roger E Summons; Paula V Welander; David A Gold
Journal:  Nat Rev Microbiol       Date:  2021-10-11       Impact factor: 60.633

5.  Archaeal lipids trace ecology and evolution of marine ammonia-oxidizing archaea.

Authors:  Ronnakrit Rattanasriampaipong; Yi Ge Zhang; Ann Pearson; Brian P Hedlund; Shuang Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-29       Impact factor: 12.779

6.  Limited Lateral Transport Bias During Export of Sea Surface Temperature Proxy Carriers in the Mediterranean Sea.

Authors:  Addison Rice; Peter D Nooteboom; Erik van Sebille; Francien Peterse; Martin Ziegler; Appy Sluijs
Journal:  Geophys Res Lett       Date:  2022-02-23       Impact factor: 5.576

7.  Extent of the annual Gulf of Mexico hypoxic zone influences microbial community structure.

Authors:  Lauren Gillies Campbell; J Cameron Thrash; Nancy N Rabalais; Olivia U Mason
Journal:  PLoS One       Date:  2019-04-25       Impact factor: 3.240

8.  Climate- and gateway-driven cooling of Late Eocene to earliest Oligocene sea surface temperatures in the North Sea Basin.

Authors:  Kasia K Śliwińska; Erik Thomsen; Stefan Schouten; Petra L Schoon; Claus Heilmann-Clausen
Journal:  Sci Rep       Date:  2019-03-14       Impact factor: 4.379

9.  Influence of Growth Phase, pH, and Temperature on the Abundance and Composition of Tetraether Lipids in the Thermoacidophile Picrophilus torridus.

Authors:  Jayme Feyhl-Buska; Yufei Chen; Chengling Jia; Jin-Xiang Wang; Chuanlun L Zhang; Eric S Boyd
Journal:  Front Microbiol       Date:  2016-08-30       Impact factor: 5.640

10.  GDGT distribution in a stratified lake and implications for the application of TEX86 in paleoenvironmental reconstructions.

Authors:  Zhaohui Zhang; Rienk H Smittenberg; Raymond S Bradley
Journal:  Sci Rep       Date:  2016-10-03       Impact factor: 4.379

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