Literature DB >> 26209821

Assessing and maximizing data quality in macromolecular crystallography.

P Andrew Karplus1, Kay Diederichs2.   

Abstract

The quality of macromolecular crystal structures depends, in part, on the quality and quantity of the data used to produce them. Here, we review recent shifts in our understanding of how to use data quality indicators to select a high resolution cutoff that leads to the best model, and of the potential to greatly increase data quality through the merging of multiple measurements from multiple passes of single crystals or from multiple crystals. Key factors supporting this shift are the introduction of more robust correlation coefficient based indicators of the precision of merged data sets as well as the recognition of the substantial useful information present in extensive amounts of data once considered too weak to be of value.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26209821      PMCID: PMC4684713          DOI: 10.1016/j.sbi.2015.07.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  45 in total

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3.  Weak data do not make a free lunch, only a cheap meal.

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4.  Diamonds in the rough: a strong case for the inclusion of weak-intensity X-ray diffraction data.

Authors:  Jimin Wang; Richard A Wing
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-04-30

5.  Structure and function of human xylulokinase, an enzyme with important roles in carbohydrate metabolism.

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Journal:  J Biol Chem       Date:  2012-11-23       Impact factor: 5.157

Review 6.  Scaling and assessment of data quality.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

7.  Better models by discarding data?

Authors:  K Diederichs; P A Karplus
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-15

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Authors:  Philip R Evans; Garib N Murshudov
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Authors:  Simon W M Tanley; Kay Diederichs; Loes M J Kroon-Batenburg; Antoine M M Schreurs; John R Helliwell
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  79 in total

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5.  On the relationship between cumulative correlation coefficients and the quality of crystallographic data sets.

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6.  Toward the computational design of protein crystals with improved resolution.

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Journal:  Acta Crystallogr D Struct Biol       Date:  2019-11-01       Impact factor: 7.652

7.  Structure of a Zinc Porphyrin-Substituted Bacterioferritin and Photophysical Properties of Iron Reduction.

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8.  Functional Profiling and Crystal Structures of Isothiocyanate Hydrolases Found in Gut-Associated and Plant-Pathogenic Bacteria.

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9.  FFAT motif phosphorylation controls formation and lipid transfer function of inter-organelle contacts.

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Journal:  J Biol Chem       Date:  2016-09-06       Impact factor: 5.157

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