Literature DB >> 28960580

On the relationship between cumulative correlation coefficients and the quality of crystallographic data sets.

Jimin Wang1, Gary W Brudvig1,2, Victor S Batista2, Peter B Moore1,2.   

Abstract

In 2012, Karplus and Diederichs demonstrated that the Pearson correlation coefficient CC1/2 is a far better indicator of the quality and resolution of crystallographic data sets than more traditional measures like merging R-factor or signal-to-noise ratio. More specifically, they proposed that CC1/2 be computed for data sets in thin shells of increasing resolution so that the resolution dependence of that quantity can be examined. Recently, however, the CC1/2 values of entire data sets, i.e., cumulative correlation coefficients, have been used as a measure of data quality. Here, we show that the difference in cumulative CC1/2 value between a data set that has been accurately measured and a data set that has not is likely to be small. Furthermore, structures obtained by molecular replacement from poorly measured data sets are likely to suffer from extreme model bias.
© 2017 The Protein Society.

Entities:  

Keywords:  CC1/2; PSII; X-ray free-electron laser; cumulative correlation coefficients; femtosecond serial crystallography; model bias; photosystem II

Mesh:

Substances:

Year:  2017        PMID: 28960580      PMCID: PMC5699489          DOI: 10.1002/pro.3314

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  30 in total

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