| Literature DB >> 28960580 |
Jimin Wang1, Gary W Brudvig1,2, Victor S Batista2, Peter B Moore1,2.
Abstract
In 2012, Karplus and Diederichs demonstrated that the Pearson correlation coefficient CC1/2 is a far better indicator of the quality and resolution of crystallographic data sets than more traditional measures like merging R-factor or signal-to-noise ratio. More specifically, they proposed that CC1/2 be computed for data sets in thin shells of increasing resolution so that the resolution dependence of that quantity can be examined. Recently, however, the CC1/2 values of entire data sets, i.e., cumulative correlation coefficients, have been used as a measure of data quality. Here, we show that the difference in cumulative CC1/2 value between a data set that has been accurately measured and a data set that has not is likely to be small. Furthermore, structures obtained by molecular replacement from poorly measured data sets are likely to suffer from extreme model bias.Entities:
Keywords: CC1/2; PSII; X-ray free-electron laser; cumulative correlation coefficients; femtosecond serial crystallography; model bias; photosystem II
Mesh:
Substances:
Year: 2017 PMID: 28960580 PMCID: PMC5699489 DOI: 10.1002/pro.3314
Source DB: PubMed Journal: Protein Sci ISSN: 0961-8368 Impact factor: 6.725