Literature DB >> 25419442

LABELING WHITE MATTER TRACTS IN HARDI BY FUSING MULTIPLE TRACT ATLASES WITH APPLICATIONS TO GENETICS.

Yan Jin1, Yonggang Shi1, Liang Zhan1, Greig I de Zubicaray2, Katie L McMahon2, Nicholas G Martin3, Margaret J Wright3, Paul M Thompson1.   

Abstract

Accurate identification of white matter structures and segmentation of fibers into tracts is important in neuroimaging and has many potential applications. Even so, it is not trivial because whole brain tractography generates hundreds of thousands of streamlines that include many false positive fibers. We developed and tested an automatic tract labeling algorithm to segment anatomically meaningful tracts from diffusion weighted images. Our multi-atlas method incorporates information from multiple hand-labeled fiber tract atlases. In validations, we showed that the method outperformed the standard ROI-based labeling using a deformable, parcellated atlas. Finally, we show a high-throughput application of the method to genetic population studies. We use the sub-voxel diffusion information from fibers in the clustered tracts based on 105-gradient HARDI scans of 86 young normal twins. The whole workflow shows promise for larger population studies in the future.

Entities:  

Keywords:  Fiber Clustering; Genetic Heritability; HARDI; Label Fusion; Tractography

Year:  2013        PMID: 25419442      PMCID: PMC4236723          DOI: 10.1109/ISBI.2013.6556524

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  11 in total

1.  A framework for a streamline-based probabilistic index of connectivity (PICo) using a structural interpretation of MRI diffusion measurements.

Authors:  Geoffrey J M Parker; Hamied A Haroon; Claudia A M Wheeler-Kingshott
Journal:  J Magn Reson Imaging       Date:  2003-08       Impact factor: 4.813

2.  Automatic fiber bundle segmentation in massive tractography datasets using a multi-subject bundle atlas.

Authors:  P Guevara; D Duclap; C Poupon; L Marrakchi-Kacem; P Fillard; D Le Bihan; M Leboyer; J Houenou; J-F Mangin
Journal:  Neuroimage       Date:  2012-03-05       Impact factor: 6.556

3.  Q-ball imaging.

Authors:  David S Tuch
Journal:  Magn Reson Med       Date:  2004-12       Impact factor: 4.668

4.  Symmetries in human brain language pathways correlate with verbal recall.

Authors:  Marco Catani; Matthew P G Allin; Masud Husain; Luca Pugliese; Marsel M Mesulam; Robin M Murray; Derek K Jones
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-15       Impact factor: 11.205

5.  Reproducibility of quantitative tractography methods applied to cerebral white matter.

Authors:  Setsu Wakana; Arvind Caprihan; Martina M Panzenboeck; James H Fallon; Michele Perry; Randy L Gollub; Kegang Hua; Jiangyang Zhang; Hangyi Jiang; Prachi Dubey; Ari Blitz; Peter van Zijl; Susumu Mori
Journal:  Neuroimage       Date:  2007-03-20       Impact factor: 6.556

6.  Structure-specific statistical mapping of white matter tracts.

Authors:  Paul A Yushkevich; Hui Zhang; Tony J Simon; James C Gee
Journal:  Neuroimage       Date:  2008-01-26       Impact factor: 6.556

7.  Atlas-guided tract reconstruction for automated and comprehensive examination of the white matter anatomy.

Authors:  Yajing Zhang; Jiangyang Zhang; Kenichi Oishi; Andreia V Faria; Hangyi Jiang; Xin Li; Kazi Akhter; Pedro Rosa-Neto; G Bruce Pike; Alan Evans; Arthur W Toga; Roger Woods; John C Mazziotta; Michael I Miller; Peter C M van Zijl; Susumu Mori
Journal:  Neuroimage       Date:  2010-05-24       Impact factor: 6.556

8.  A generative model for image segmentation based on label fusion.

Authors:  Mert R Sabuncu; B T Thomas Yeo; Koen Van Leemput; Bruce Fischl; Polina Golland
Journal:  IEEE Trans Med Imaging       Date:  2010-06-17       Impact factor: 10.048

9.  Automatic Population HARDI White Matter Tract Clustering by Label Fusion of Multiple Tract Atlases.

Authors:  Yan Jin; Yonggang Shi; Liang Zhan; Junning Li; Greig I de Zubicaray; Katie L McMahon; Nicholas G Martin; Margaret J Wright; Paul M Thompson
Journal:  Multimodal Brain Image Anal (2012)       Date:  2012-01-01

10.  Atlas-based whole brain white matter analysis using large deformation diffeomorphic metric mapping: application to normal elderly and Alzheimer's disease participants.

Authors:  Kenichi Oishi; Andreia Faria; Hangyi Jiang; Xin Li; Kazi Akhter; Jiangyang Zhang; John T Hsu; Michael I Miller; Peter C M van Zijl; Marilyn Albert; Constantine G Lyketsos; Roger Woods; Arthur W Toga; G Bruce Pike; Pedro Rosa-Neto; Alan Evans; John Mazziotta; Susumu Mori
Journal:  Neuroimage       Date:  2009-06       Impact factor: 6.556

View more
  18 in total

1.  Rich club analysis in the Alzheimer's disease connectome reveals a relatively undisturbed structural core network.

Authors:  Madelaine Daianu; Neda Jahanshad; Talia M Nir; Clifford R Jack; Michael W Weiner; Matt A Bernstein; Paul M Thompson
Journal:  Hum Brain Mapp       Date:  2015-06-03       Impact factor: 5.038

2.  Multi-modal Registration Improves Group Discrimination in Pediatric Traumatic Brain Injury.

Authors:  Emily L Dennis; Faisal Rashid; Julio Villalon-Reina; Gautam Prasad; Joshua Faskowitz; Talin Babikian; Richard Mink; Christopher Babbitt; Jeffrey Johnson; Christopher C Giza; Robert F Asarnow; Paul M Thompson
Journal:  Brainlesion       Date:  2016-10

3.  MAPPING AGE EFFECTS ALONG FIBER TRACTS IN YOUNG ADULTS.

Authors:  Emily L Dennis; Faisal Rashid; Josh Faskowitz; Yan Jin; Katie L McMahon; Greig I de Zubicaray; Nicholas G Martin; Ian B Hickie; Margaret J Wright; Neda Jahanshad; Paul M Thompson
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2017-06-19

4.  Accelerating Global Tractography Using Parallel Markov Chain Monte Carlo.

Authors:  Haiyong Wu; Geng Chen; Zhongxue Yang; Dinggang Shen; Pew-Thian Yap
Journal:  Comput Diffus MRI (2015)       Date:  2016-04-09

Review 5.  Genetics of the connectome.

Authors:  Paul M Thompson; Tian Ge; David C Glahn; Neda Jahanshad; Thomas E Nichols
Journal:  Neuroimage       Date:  2013-05-21       Impact factor: 6.556

6.  Automatic clustering and population analysis of white matter tracts using maximum density paths.

Authors:  Gautam Prasad; Shantanu H Joshi; Neda Jahanshad; Julio Villalon-Reina; Iman Aganj; Christophe Lenglet; Guillermo Sapiro; Katie L McMahon; Greig I de Zubicaray; Nicholas G Martin; Margaret J Wright; Arthur W Toga; Paul M Thompson
Journal:  Neuroimage       Date:  2014-04-18       Impact factor: 6.556

7.  Identification of infants at high-risk for autism spectrum disorder using multiparameter multiscale white matter connectivity networks.

Authors:  Yan Jin; Chong-Yaw Wee; Feng Shi; Kim-Han Thung; Dong Ni; Pew-Thian Yap; Dinggang Shen
Journal:  Hum Brain Mapp       Date:  2015-09-14       Impact factor: 5.038

8.  WHITE MATTER INTEGRITY IN TRAUMATIC BRAIN INJURY: EFFECTS OF PERMISSIBLE FIBER TURNING ANGLE.

Authors:  Emily L Dennis; Yan Jin; Claudia Kernan; Talin Babikian; Richard Mink; Christopher Babbitt; Jeffrey Johnson; Christopher C Giza; Robert F Asarnow; Paul M Thompson
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2015-04

9.  Diverging white matter trajectories in children after traumatic brain injury: The RAPBI study.

Authors:  Emily L Dennis; Faisal Rashid; Monica U Ellis; Talin Babikian; Roza M Vlasova; Julio E Villalon-Reina; Yan Jin; Alexander Olsen; Richard Mink; Christopher Babbitt; Jeffrey Johnson; Christopher C Giza; Paul M Thompson; Robert F Asarnow
Journal:  Neurology       Date:  2017-03-15       Impact factor: 9.910

10.  Callosal Function in Pediatric Traumatic Brain Injury Linked to Disrupted White Matter Integrity.

Authors:  Emily L Dennis; Monica U Ellis; Sarah D Marion; Yan Jin; Lisa Moran; Alexander Olsen; Claudia Kernan; Talin Babikian; Richard Mink; Christopher Babbitt; Jeffrey Johnson; Christopher C Giza; Paul M Thompson; Robert F Asarnow
Journal:  J Neurosci       Date:  2015-07-15       Impact factor: 6.167

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.