Literature DB >> 26205159

A Model for the Origin of the First mRNAs.

Massimo Di Giulio1.   

Abstract

I present a model for the evolution of the genetic code that seems to predict, in a totally natural way, the origin of the first mRNAs. In particular, the model--bestowing to peptidated-RNAs the major catalytic role in the phase that triggered the genetic code origin--suggests that interactions between peptidated-RNAs led to the synthesis of these ancestral catalysts. Within every group of these interactions, a pre-mRNA molecule evolved that was able to direct all interactions between peptidated-RNAs of that particular group. This represented an improvement in the coding of these interactions compared to the interaction groups that did not evolve these pre-mRNAs. This would represent a natural and intrinsic tendency. Therefore, these molecules of pre-mRNAs were positively selected because they improved the synthesis of the catalysts through this first form of coding of interactions among peptidated-RNAs. Thus, according to the model were the pairings--involving a base number greater than three (ennuplet code)-between peptidated-RNAs and pre-mRNAs that would represent the first form of the genetic code. The evolution of this ennuplet code to the triplet code might have been simply triggered by the natural tendency to make the reading module-that is the interactions between peptidated-RNAs and pre-mRNAs--of the different ennuplets to the triplet uniform, because in this way the heterogeneity existing in interactions between the aminoacylated or peptidated-RNAs and pre-mRNAs was eliminated. That is to say, there might have been the natural tendency toward the triplets because these would have made these interactions more efficient, given that the ennuplets were at least more cumbersome and therefore less economic and with an inferior adaptive value; and also because the triplets would represent the simpler choice among that available given that the doublets would have codified too few meanings and quartets instead too many. Therefore, the genetic code would result from a very long era of interactions among peptidated-RNAs under the continuous and fundamental selective pressure for improving catalysts' syntheses and thus catalysis. The model is strongly corroborated by the explanation that the tmRNA molecule (transfer-messenger RNA) would seem to be the very molecule of pre-mRNAs that the model predicts. In other words, the tmRNA would be the molecular fossil of the evolutionary stages that led to the appearance of the first mRNAs.

Mesh:

Substances:

Year:  2015        PMID: 26205159     DOI: 10.1007/s00239-015-9691-y

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  24 in total

Review 1.  Emerging views on tmRNA-mediated protein tagging and ribosome rescue.

Authors:  R Gillet; B Felden
Journal:  Mol Microbiol       Date:  2001-11       Impact factor: 3.501

2.  Evolution of the genetic code by incorporation of amino acids that improved or changed protein function.

Authors:  Brian R Francis
Journal:  J Mol Evol       Date:  2013-06-07       Impact factor: 2.395

3.  A thermodynamic basis for prebiotic amino acid synthesis and the nature of the first genetic code.

Authors:  Paul G Higgs; Ralph E Pudritz
Journal:  Astrobiology       Date:  2009-06       Impact factor: 4.335

4.  Reflections on the origin of the genetic code: a hypothesis.

Authors:  M Di Giulio
Journal:  J Theor Biol       Date:  1998-03-21       Impact factor: 2.691

Review 5.  A bacterial RNA that functions as both a tRNA and an mRNA.

Authors:  A Muto; C Ushida; H Himeno
Journal:  Trends Biochem Sci       Date:  1998-01       Impact factor: 13.807

Review 6.  On the RNA world: evidence in favor of an early ribonucleopeptide world.

Authors:  M Di Giulio
Journal:  J Mol Evol       Date:  1997-12       Impact factor: 2.395

7.  Evolution of the genetic apparatus.

Authors:  L E Orgel
Journal:  J Mol Biol       Date:  1968-12       Impact factor: 5.469

8.  Evolution of the coenzymes.

Authors:  G A King
Journal:  Biosystems       Date:  1980       Impact factor: 1.973

9.  Transfer-RNA: the early adaptor.

Authors:  M Eigen; R Winkler-Oswatitsch
Journal:  Naturwissenschaften       Date:  1981-05

10.  An extension of the coevolution theory of the origin of the genetic code.

Authors:  Massimo Di Giulio
Journal:  Biol Direct       Date:  2008-09-05       Impact factor: 4.540

View more
  8 in total

1.  An Autotrophic Origin for the Coded Amino Acids is Concordant with the Coevolution Theory of the Genetic Code.

Authors:  Massimo Di Giulio
Journal:  J Mol Evol       Date:  2016-10-14       Impact factor: 2.395

2.  A Non-neutral Origin for Error Minimization in the Origin of the Genetic Code.

Authors:  Massimo Di Giulio
Journal:  J Mol Evol       Date:  2018-10-25       Impact factor: 2.395

Review 3.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

Review 4.  Origins of tmRNA: the missing link in the birth of protein synthesis?

Authors:  Kevin Macé; Reynald Gillet
Journal:  Nucleic Acids Res       Date:  2016-08-02       Impact factor: 16.971

Review 5.  Viral tRNA Mimicry from a Biocommunicative Perspective.

Authors:  Ascensión Ariza-Mateos; Jordi Gómez
Journal:  Front Microbiol       Date:  2017-12-05       Impact factor: 5.640

6.  Evolution of Nucleotide Punctuation Marks: From Structural to Linear Signals.

Authors:  Nawal El Houmami; Hervé Seligmann
Journal:  Front Genet       Date:  2017-03-27       Impact factor: 4.599

7.  Chimeric Translation for Mitochondrial Peptides: Regular and Expanded Codons.

Authors:  Hervé Seligmann; Ganesh Warthi
Journal:  Comput Struct Biotechnol J       Date:  2019-08-23       Impact factor: 7.271

8.  tRNA Core Hypothesis for the Transition from the RNA World to the Ribonucleoprotein World.

Authors:  Savio T de Farias; Thais G Rêgo; Marco V José
Journal:  Life (Basel)       Date:  2016-03-23
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.