Literature DB >> 30361751

A Non-neutral Origin for Error Minimization in the Origin of the Genetic Code.

Massimo Di Giulio1.   

Abstract

Massey (J Mol Evol 67:510-516, 2008; J Theor Biol 408:237-242, 2016; Nat Comput. https://doi.org/10.1007/s11047-017-9669-3, 2018) claims that the error minimization of the genetic code is derived by means of a neutral process and was not due to the action of natural selection. Here, I argue that this neutralist hypothesis of the origin of error minimization is not based directly on any neutral process but it could be only indirectly. On the contrary, it has been natural selection that has acted during the origin of the genetic code determining the property that similar amino acids are coded by similar codons within the genetic code table.

Keywords:  Error minimization; Genetic code coevolution theory; Genetic code physicochemical theory; Natural selection

Mesh:

Substances:

Year:  2018        PMID: 30361751     DOI: 10.1007/s00239-018-9871-7

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  29 in total

1.  Physicochemical optimization in the genetic code origin as the number of codified amino acids increases.

Authors:  M Di Giulio; M Medugno
Journal:  J Mol Evol       Date:  1999-07       Impact factor: 2.395

2.  Genetic code origin: are the pathways of type Glu-tRNA(Gln) --> Gln-tRNA(Gln) molecular fossils or not?

Authors:  Massimo Di Giulio
Journal:  J Mol Evol       Date:  2002-11       Impact factor: 2.395

3.  Unassigned codons, nonsense suppression, and anticodon modifications in the evolution of the genetic code.

Authors:  Peter T S van der Gulik; Wouter D Hoff
Journal:  J Mol Evol       Date:  2011-11-11       Impact factor: 2.395

4.  An Autotrophic Origin for the Coded Amino Acids is Concordant with the Coevolution Theory of the Genetic Code.

Authors:  Massimo Di Giulio
Journal:  J Mol Evol       Date:  2016-10-14       Impact factor: 2.395

5.  The phylogeny of tRNA sequences provides evidence for ambiguity reduction in the origin of the genetic code.

Authors:  W M Fitch; K Upper
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

6.  Role of minimization of chemical distances between amino acids in the evolution of the genetic code.

Authors:  J T Wong
Journal:  Proc Natl Acad Sci U S A       Date:  1980-02       Impact factor: 11.205

7.  Role of the amino-acid "code" and of selection for conformation in the evolution of proteins.

Authors:  C J Epstein
Journal:  Nature       Date:  1966-04-02       Impact factor: 49.962

8.  A four-column theory for the origin of the genetic code: tracing the evolutionary pathways that gave rise to an optimized code.

Authors:  Paul G Higgs
Journal:  Biol Direct       Date:  2009-04-24       Impact factor: 4.540

9.  A multivariate study of the relationship between the genetic code and the physical-chemical properties of amino acids.

Authors:  M Sjöström; S Wold
Journal:  J Mol Evol       Date:  1985       Impact factor: 2.395

10.  An extension of the coevolution theory of the origin of the genetic code.

Authors:  Massimo Di Giulio
Journal:  Biol Direct       Date:  2008-09-05       Impact factor: 4.540

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  3 in total

1.  Genetic Code Error Minimization as a Non-Adaptive But Beneficial Trait.

Authors:  Steven E Massey
Journal:  J Mol Evol       Date:  2019-01-02       Impact factor: 2.395

2.  Adaptive Properties of the Genetically Encoded Amino Acid Alphabet Are Inherited from Its Subsets.

Authors:  Melissa Ilardo; Rudrarup Bose; Markus Meringer; Bakhtiyor Rasulev; Natalie Grefenstette; James Stephenson; Stephen Freeland; Richard J Gillams; Christopher J Butch; H James Cleaves
Journal:  Sci Rep       Date:  2019-08-28       Impact factor: 4.379

3.  Little Evidence the Standard Genetic Code Is Optimized for Resource Conservation.

Authors:  Hana Rozhoňová; Joshua L Payne
Journal:  Mol Biol Evol       Date:  2021-10-27       Impact factor: 16.240

  3 in total

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