Literature DB >> 26190106

A CRISPR-Based Screen Identifies Genes Essential for West-Nile-Virus-Induced Cell Death.

Hongming Ma1, Ying Dang1, Yonggan Wu2, Gengxiang Jia1, Edgar Anaya1, Junli Zhang1, Sojan Abraham1, Jang-Gi Choi1, Guojun Shi3, Ling Qi3, N Manjunath4, Haoquan Wu5.   

Abstract

West Nile virus (WNV) causes an acute neurological infection attended by massive neuronal cell death. However, the mechanism(s) behind the virus-induced cell death is poorly understood. Using a library containing 77,406 sgRNAs targeting 20,121 genes, we performed a genome-wide screen followed by a second screen with a sub-library. Among the genes identified, seven genes, EMC2, EMC3, SEL1L, DERL2, UBE2G2, UBE2J1, and HRD1, stood out as having the strongest phenotype, whose knockout conferred strong protection against WNV-induced cell death with two different WNV strains and in three cell lines. Interestingly, knockout of these genes did not block WNV replication. Thus, these appear to be essential genes that link WNV replication to downstream cell death pathway(s). In addition, the fact that all of these genes belong to the ER-associated protein degradation (ERAD) pathway suggests that this might be the primary driver of WNV-induced cell death.
Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26190106      PMCID: PMC4559080          DOI: 10.1016/j.celrep.2015.06.049

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  47 in total

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Authors:  M C Parquet; A Kumatori; F Hasebe; K Morita; A Igarashi
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2.  Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease.

Authors:  Seung Woo Cho; Sojung Kim; Jong Min Kim; Jin-Soo Kim
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3.  High-throughput screening of a CRISPR/Cas9 library for functional genomics in human cells.

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4.  Appraising the roles of CBLL1 and the ubiquitin/proteasome system for flavivirus entry and replication.

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Journal:  J Virol       Date:  2010-12-29       Impact factor: 5.103

5.  Role of cell-type-specific endoplasmic reticulum-associated degradation in polyomavirus trafficking.

Authors:  Shauna M Bennett; Mengxi Jiang; Michael J Imperiale
Journal:  J Virol       Date:  2013-06-05       Impact factor: 5.103

Review 6.  Host cell factors in HIV replication: meta-analysis of genome-wide studies.

Authors:  Frederic D Bushman; Nirav Malani; Jason Fernandes; Iván D'Orso; Gerard Cagney; Tracy L Diamond; Honglin Zhou; Daria J Hazuda; Amy S Espeseth; Renate König; Sourav Bandyopadhyay; Trey Ideker; Stephen P Goff; Nevan J Krogan; Alan D Frankel; John A T Young; Sumit K Chanda
Journal:  PLoS Pathog       Date:  2009-05-29       Impact factor: 6.823

7.  Discovery of insect and human dengue virus host factors.

Authors:  October M Sessions; Nicholas J Barrows; Jayme A Souza-Neto; Timothy J Robinson; Christine L Hershey; Mary A Rodgers; Jose L Ramirez; George Dimopoulos; Priscilla L Yang; James L Pearson; Mariano A Garcia-Blanco
Journal:  Nature       Date:  2009-04-23       Impact factor: 49.962

8.  Genome editing with RNA-guided Cas9 nuclease in zebrafish embryos.

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Authors:  Wenyan Jiang; David Bikard; David Cox; Feng Zhang; Luciano A Marraffini
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  107 in total

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2.  West Nile Virus-Inclusive Single-Cell RNA Sequencing Reveals Heterogeneity in the Type I Interferon Response within Single Cells.

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3.  Small molecule grp94 inhibitors block dengue and Zika virus replication.

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Journal:  Antiviral Res       Date:  2019-08-14       Impact factor: 5.970

Review 4.  Biochemistry and Molecular Biology of Flaviviruses.

Authors:  Nicholas J Barrows; Rafael K Campos; Kuo-Chieh Liao; K Reddisiva Prasanth; Ruben Soto-Acosta; Shih-Chia Yeh; Geraldine Schott-Lerner; Julien Pompon; October M Sessions; Shelton S Bradrick; Mariano A Garcia-Blanco
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5.  Back to the Future: Mutant Hunts Are Still the Way To Go.

Authors:  Fred Winston; Douglas Koshland
Journal:  Genetics       Date:  2016-07       Impact factor: 4.562

Review 6.  Genome-Editing Technologies: Principles and Applications.

Authors:  Thomas Gaj; Shannon J Sirk; Sai-Lan Shui; Jia Liu
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-12-01       Impact factor: 10.005

7.  A stable but reversible integrated surrogate reporter for assaying CRISPR/Cas9-stimulated homology-directed repair.

Authors:  Yahong Wen; Grace Liao; Thomas Pritchard; Ting-Ting Zhao; Jon P Connelly; Shondra M Pruett-Miller; Valerie Blanc; Nicholas O Davidson; Blair B Madison
Journal:  J Biol Chem       Date:  2017-02-22       Impact factor: 5.157

Review 8.  Functional variomics and network perturbation: connecting genotype to phenotype in cancer.

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9.  Global Interactomics Uncovers Extensive Organellar Targeting by Zika Virus.

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10.  Necroptosis-based CRISPR knockout screen reveals Neuropilin-1 as a critical host factor for early stages of murine cytomegalovirus infection.

Authors:  Rebecca K Lane; Hongyan Guo; Amanda D Fisher; Jonathan Diep; Zhao Lai; Yidong Chen; Jason W Upton; Jan Carette; Edward S Mocarski; William J Kaiser
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-03       Impact factor: 11.205

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