Literature DB >> 27908936

Genome-Editing Technologies: Principles and Applications.

Thomas Gaj1, Shannon J Sirk2, Sai-Lan Shui3, Jia Liu3.   

Abstract

Targeted nucleases have provided researchers with the ability to manipulate virtually any genomic sequence, enabling the facile creation of isogenic cell lines and animal models for the study of human disease, and promoting exciting new possibilities for human gene therapy. Here we review three foundational technologies-clustered regularly interspaced short palindromic repeats (CRISPR)-CRISPR-associated protein 9 (Cas9), transcription activator-like effector nucleases (TALENs), and zinc-finger nucleases (ZFNs). We discuss the engineering advances that facilitated their development and highlight several achievements in genome engineering that were made possible by these tools. We also consider artificial transcription factors, illustrating how this technology can complement targeted nucleases for synthetic biology and gene therapy.
Copyright © 2016 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2016        PMID: 27908936      PMCID: PMC5131771          DOI: 10.1101/cshperspect.a023754

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  256 in total

Review 1.  DNA recognition by Cys2His2 zinc finger proteins.

Authors:  S A Wolfe; L Nekludova; C O Pabo
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

2.  Non-transgenic Plant Genome Editing Using Purified Sequence-Specific Nucleases.

Authors:  Song Luo; Jin Li; Thomas J Stoddard; Nicholas J Baltes; Zachary L Demorest; Benjamin M Clasen; Andrew Coffman; Adam Retterath; Luc Mathis; Daniel F Voytas; Feng Zhang
Journal:  Mol Plant       Date:  2015-06-12       Impact factor: 13.164

3.  CRISPR-Cas9 Based Engineering of Actinomycetal Genomes.

Authors:  Yaojun Tong; Pep Charusanti; Lixin Zhang; Tilmann Weber; Sang Yup Lee
Journal:  ACS Synth Biol       Date:  2015-04-07       Impact factor: 5.110

4.  Multiplex metabolic pathway engineering using CRISPR/Cas9 in Saccharomyces cerevisiae.

Authors:  Tadas Jakočiūnas; Ida Bonde; Markus Herrgård; Scott J Harrison; Mette Kristensen; Lasse E Pedersen; Michael K Jensen; Jay D Keasling
Journal:  Metab Eng       Date:  2015-01-28       Impact factor: 9.783

5.  In vivo genome editing improves muscle function in a mouse model of Duchenne muscular dystrophy.

Authors:  Christopher E Nelson; Chady H Hakim; David G Ousterout; Pratiksha I Thakore; Eirik A Moreb; Ruth M Castellanos Rivera; Sarina Madhavan; Xiufang Pan; F Ann Ran; Winston X Yan; Aravind Asokan; Feng Zhang; Dongsheng Duan; Charles A Gersbach
Journal:  Science       Date:  2015-12-31       Impact factor: 47.728

6.  TALE nickase-mediated SP110 knockin endows cattle with increased resistance to tuberculosis.

Authors:  Haibo Wu; Yongsheng Wang; Yan Zhang; Mingqi Yang; Jiaxing Lv; Jun Liu; Yong Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-02       Impact factor: 11.205

7.  Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells.

Authors:  Lior Nissim; Samuel D Perli; Alexandra Fridkin; Pablo Perez-Pinera; Timothy K Lu
Journal:  Mol Cell       Date:  2014-05-15       Impact factor: 17.970

8.  Light-inducible spatiotemporal control of gene activation by customizable zinc finger transcription factors.

Authors:  Lauren R Polstein; Charles A Gersbach
Journal:  J Am Chem Soc       Date:  2012-09-27       Impact factor: 15.419

9.  megaTALs: a rare-cleaving nuclease architecture for therapeutic genome engineering.

Authors:  Sandrine Boissel; Jordan Jarjour; Alexander Astrakhan; Andrew Adey; Agnès Gouble; Philippe Duchateau; Jay Shendure; Barry L Stoddard; Michael T Certo; David Baker; Andrew M Scharenberg
Journal:  Nucleic Acids Res       Date:  2013-11-26       Impact factor: 16.971

10.  Complete decoding of TAL effectors for DNA recognition.

Authors:  Junjiao Yang; Yuan Zhang; Pengfei Yuan; Yuexin Zhou; Changzu Cai; Qingpeng Ren; Dingqiao Wen; Coco Chu; Hai Qi; Wensheng Wei
Journal:  Cell Res       Date:  2014-02-11       Impact factor: 25.617

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  44 in total

Review 1.  Genetic evidence for role of integration of fast and slow neurotransmission in schizophrenia.

Authors:  A Devor; O A Andreassen; Y Wang; T Mäki-Marttunen; O B Smeland; C-C Fan; A J Schork; D Holland; W K Thompson; A Witoelar; C-H Chen; R S Desikan; L K McEvoy; S Djurovic; P Greengard; P Svenningsson; G T Einevoll; A M Dale
Journal:  Mol Psychiatry       Date:  2017-03-28       Impact factor: 15.992

Review 2.  Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement.

Authors:  Gaurav Agarwal; Himabindu Kudapa; Abirami Ramalingam; Divya Choudhary; Pallavi Sinha; Vanika Garg; Vikas K Singh; Gunvant B Patil; Manish K Pandey; Henry T Nguyen; Baozhu Guo; Ramanjulu Sunkar; Chad E Niederhuth; Rajeev K Varshney
Journal:  Funct Integr Genomics       Date:  2020-10-21       Impact factor: 3.410

Review 3.  The Post-GWAS Era: From Association to Function.

Authors:  Michael D Gallagher; Alice S Chen-Plotkin
Journal:  Am J Hum Genet       Date:  2018-05-03       Impact factor: 11.025

Review 4.  CRISPR Editing Technology in Biological and Biomedical Investigation.

Authors:  Martyn K White; Rafal Kaminski; Won-Bin Young; Pamela C Roehm; Kamel Khalili
Journal:  J Cell Biochem       Date:  2017-07-04       Impact factor: 4.429

Review 5.  Identifying causal variants and genes using functional genomics in specialized cell types and contexts.

Authors:  Boxiang Liu; Stephen B Montgomery
Journal:  Hum Genet       Date:  2019-07-17       Impact factor: 4.132

Review 6.  Genome-editing in millets: current knowledge and future perspectives.

Authors:  Antony Ceasar
Journal:  Mol Biol Rep       Date:  2021-11-26       Impact factor: 2.316

7.  Nonhuman Primate Models of Neurodegenerative Disorders.

Authors:  Marina E Emborg
Journal:  ILAR J       Date:  2017-12-01

Review 8.  Modulation of DNA double-strand break repair as a strategy to improve precise genome editing.

Authors:  Ujjayinee Ray; Sathees C Raghavan
Journal:  Oncogene       Date:  2020-09-03       Impact factor: 9.867

Review 9.  Selecting a Cell Engineering Methodology During Cell Therapy Product Development.

Authors:  Lauren M Timmins; Alexandra M Burr; Kristina Carroll; Robert Keefe; Matthew Teryek; Louis J Cantolupo; Johannes C M van der Loo; Thomas R J Heathman; Adam Gormley; David Smith; Biju Parekkadan
Journal:  Cell Transplant       Date:  2021 Jan-Dec       Impact factor: 4.064

Review 10.  Adeno-Associated Viral Vectors as Versatile Tools for Parkinson's Research, Both for Disease Modeling Purposes and for Therapeutic Uses.

Authors:  Ana Fajardo-Serrano; Alberto J Rico; Elvira Roda; Adriana Honrubia; Sandra Arrieta; Goiaz Ariznabarreta; Julia Chocarro; Elena Lorenzo-Ramos; Alvaro Pejenaute; Alfonso Vázquez; José Luis Lanciego
Journal:  Int J Mol Sci       Date:  2021-06-15       Impact factor: 5.923

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