Literature DB >> 26175299

Untangling taxonomy: a DNA barcode reference library for Canadian spiders.

Gergin A Blagoev1, Jeremy R deWaard1, Sujeevan Ratnasingham1, Stephanie L deWaard1, Liuqiong Lu1, James Robertson1, Angela C Telfer1, Paul D N Hebert1.   

Abstract

Approximately 1460 species of spiders have been reported from Canada, 3% of the global fauna. This study provides a DNA barcode reference library for 1018 of these species based upon the analysis of more than 30,000 specimens. The sequence results show a clear barcode gap in most cases with a mean intraspecific divergence of 0.78% vs. a minimum nearest-neighbour (NN) distance averaging 7.85%. The sequences were assigned to 1359 Barcode index numbers (BINs) with 1344 of these BINs composed of specimens belonging to a single currently recognized species. There was a perfect correspondence between BIN membership and a known species in 795 cases, while another 197 species were assigned to two or more BINs (556 in total). A few other species (26) were involved in BIN merges or in a combination of merges and splits. There was only a weak relationship between the number of specimens analysed for a species and its BIN count. However, three species were clear outliers with their specimens being placed in 11-22 BINs. Although all BIN splits need further study to clarify the taxonomic status of the entities involved, DNA barcodes discriminated 98% of the 1018 species. The present survey conservatively revealed 16 species new to science, 52 species new to Canada and major range extensions for 426 species. However, if most BIN splits detected in this study reflect cryptic taxa, the true species count for Canadian spiders could be 30-50% higher than currently recognized.
© 2015 The Authors. Molecular Ecology Resources Published by John Wiley & Sons Ltd.

Keywords:  Araneae; Barcode Index Numbers; DNA barcoding; operational taxonomic units; species identification; spiders

Mesh:

Year:  2015        PMID: 26175299     DOI: 10.1111/1755-0998.12444

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  27 in total

Review 1.  Acari of Canada.

Authors:  Frédéric Baulieu; Wayne Knee; Victoria Nowell; Marla Schwarzfeld; Zoë Lindo; Valerie M Behan-Pelletier; Lisa Lumley; Monica R Young; Ian Smith; Heather C Proctor; Sergei V Mironov; Terry D Galloway; David E Walter; Evert E Lindquist
Journal:  Zookeys       Date:  2019-01-24       Impact factor: 1.546

2.  A preliminary molecular phylogeny shows Japanese and Austrian populations of the red mite Balaustium murorum (Acari: Trombidiformes: Erythraeidae) to be closely related.

Authors:  Shimpei F Hiruta; Satoshi Shimano; Minoru Shiba
Journal:  Exp Appl Acarol       Date:  2018-02-28       Impact factor: 2.132

3.  A DNA barcode-assisted annotated checklist of the spider (Arachnida, Araneae) communities associated to white oak woodlands in Spanish National Parks.

Authors:  Luís C Crespo; Marc Domènech; Alba Enguídanos; Jagoba Malumbres-Olarte; Pedro Cardoso; Jordi Moya-Laraño; Cristina Frías-López; Nuria Macías-Hernández; Eva De Mas; Paola Mazzuca; Elisa Mora; Vera Opatova; Enric Planas; Carles Ribera; Marcos Roca-Cusachs; Dolores Ruiz; Pedro Sousa; Vanina Tonzo; Miquel A Arnedo
Journal:  Biodivers Data J       Date:  2018-11-29

4.  Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve.

Authors:  Angela C Telfer; Monica R Young; Jenna Quinn; Kate Perez; Crystal N Sobel; Jayme E Sones; Valerie Levesque-Beaudin; Rachael Derbyshire; Jose Fernandez-Triana; Rodolphe Rougerie; Abinah Thevanayagam; Adrian Boskovic; Alex V Borisenko; Alex Cadel; Allison Brown; Anais Pages; Anibal H Castillo; Annegret Nicolai; Barb Mockford Glenn Mockford; Belén Bukowski; Bill Wilson; Brock Trojahn; Carole Ann Lacroix; Chris Brimblecombe; Christoper Hay; Christmas Ho; Claudia Steinke; Connor P Warne; Cristina Garrido Cortes; Daniel Engelking; Danielle Wright; Dario A Lijtmaer; David Gascoigne; David Hernandez Martich; Derek Morningstar; Dirk Neumann; Dirk Steinke; Donna DeBruin Marco DeBruin; Dylan Dobias; Elizabeth Sears; Ellen Richard; Emily Damstra; Evgeny V Zakharov; Frederic Laberge; Gemma E Collins; Gergin A Blagoev; Gerrie Grainge; Graham Ansell; Greg Meredith; Ian Hogg; Jaclyn McKeown; Janet Topan; Jason Bracey; Jerry Guenther; Jesse Sills-Gilligan; Joseph Addesi; Joshua Persi; Kara K S Layton; Kareina D'Souza; Kencho Dorji; Kevin Grundy; Kirsti Nghidinwa; Kylee Ronnenberg; Kyung Min Lee; Linxi Xie; Liuqiong Lu; Lyubomir Penev; Mailyn Gonzalez; Margaret E Rosati; Mari Kekkonen; Maria Kuzmina; Marianne Iskandar; Marko Mutanen; Maryam Fatahi; Mikko Pentinsaari; Miriam Bauman; Nadya Nikolova; Natalia V Ivanova; Nathaniel Jones; Nimalka Weerasuriya; Norman Monkhouse; Pablo D Lavinia; Paul Jannetta; Priscila E Hanisch; R Troy McMullin; Rafael Ojeda Flores; Raphaëlle Mouttet; Reid Vender; Renee N Labbee; Robert Forsyth; Rob Lauder; Ross Dickson; Ruth Kroft; Scott E Miller; Shannon MacDonald; Sishir Panthi; Stephanie Pedersen; Stephanie Sobek-Swant; Suresh Naik; Tatsiana Lipinskaya; Thanushi Eagalle; Thibaud Decaëns; Thibault Kosuth; Thomas Braukmann; Tom Woodcock; Tomas Roslin; Tony Zammit; Victoria Campbell; Vlad Dinca; Vlada Peneva; Paul D N Hebert; Jeremy R deWaard
Journal:  Biodivers Data J       Date:  2015-08-30

5.  Counting animal species with DNA barcodes: Canadian insects.

Authors:  Paul D N Hebert; Sujeevan Ratnasingham; Evgeny V Zakharov; Angela C Telfer; Valerie Levesque-Beaudin; Megan A Milton; Stephanie Pedersen; Paul Jannetta; Jeremy R deWaard
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-09-05       Impact factor: 6.237

6.  Patterns of Protein Evolution in Cytochrome c Oxidase 1 (COI) from the Class Arachnida.

Authors:  Monica R Young; Paul D N Hebert
Journal:  PLoS One       Date:  2015-08-26       Impact factor: 3.240

7.  Towards a DNA Barcode Reference Database for Spiders and Harvestmen of Germany.

Authors:  Jonas J Astrin; Hubert Höfer; Jörg Spelda; Joachim Holstein; Steffen Bayer; Lars Hendrich; Bernhard A Huber; Karl-Hinrich Kielhorn; Hans-Joachim Krammer; Martin Lemke; Juan Carlos Monje; Jérôme Morinière; Björn Rulik; Malte Petersen; Hannah Janssen; Christoph Muster
Journal:  PLoS One       Date:  2016-09-28       Impact factor: 3.240

8.  DNA barcode data accurately assign higher spider taxa.

Authors:  Jonathan A Coddington; Ingi Agnarsson; Ren-Chung Cheng; Klemen Čandek; Amy Driskell; Holger Frick; Matjaž Gregorič; Rok Kostanjšek; Christian Kropf; Matthew Kweskin; Tjaša Lokovšek; Miha Pipan; Nina Vidergar; Matjaž Kuntner
Journal:  PeerJ       Date:  2016-07-20       Impact factor: 2.984

9.  Investigating the effect of forestry on leaf-litter arthropods (Algonquin Park, Ontario, Canada).

Authors:  M Alex Smith; Amanda Boyd; Amelia Chan; Simonne Clout; Paulson des Brisay; Sarah Dolson; Thanushi Eagalle; Sean Espinola; Aaron Fairweather; Sydney Frank; Christopher Fruetel; Cristina Garrido Cortes; James Hall; Chris Ho; Eryk Matczak; Sandra McCubbin; Megan McPhee; Kate A Pare; Kelsie Paris; Ellen Richard; Morgan Roblin; Cassandra Russell; Ryan Snyder; Carolyn Trombley; Tyler Schmitt; Caitlin Vandermeer; Connor Warne; Natasha Welch; Chelsie Xavier-Blower
Journal:  PLoS One       Date:  2017-06-02       Impact factor: 3.240

10.  The School Malaise Trap Program: Coupling educational outreach with scientific discovery.

Authors:  Dirk Steinke; Vanessa Breton; Emily Berzitis; Paul D N Hebert
Journal:  PLoS Biol       Date:  2017-04-24       Impact factor: 8.029

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.